Illumina / ExpansionHunterDenovoLinks
A suite of tools for detecting expansions of short tandem repeats
☆82Updated 2 years ago
Alternatives and similar repositories for ExpansionHunterDenovo
Users that are interested in ExpansionHunterDenovo are comparing it to the libraries listed below
Sorting:
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 weeks ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- WisecondorX — An evolved WISECONDOR☆99Updated last week
- ☆115Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- ☆123Updated 8 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆80Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆106Updated 3 weeks ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆114Updated last week
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- ☆39Updated last year
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- Tools for the analysis of structural variation in genomes☆79Updated last year
- ABRA2☆92Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆119Updated 2 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- NEAT read simulation tools☆98Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last month
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated 2 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 2 weeks ago
- Segmented HAPlotype Estimation and Imputation Tool☆84Updated last week
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Read visualizer for structural variants☆84Updated 6 years ago