Scripts for analyses and figures for SNP STR Imputation manuscript
☆14Jul 24, 2018Updated 8 years ago
Alternatives and similar repositories for snpstr-imputation
Users that are interested in snpstr-imputation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- This is the Haplotypo repository☆22May 24, 2024Updated 2 years ago
- STR genotyping with WGS and Amplicon/Target sequencing data☆17Feb 2, 2026Updated 9 months ago
- Toolkit for genome-wide analysis of tandem repeats☆65Oct 15, 2026Updated 3 weeks ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Mathematica pipeline for genetic analysis in multiparental populations☆13Jan 7, 2025Updated last year
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆28May 28, 2026Updated 5 months ago
- ☆12Apr 21, 2023Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆16Updated this week
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆14Oct 29, 2026Updated last week
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Sep 28, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 9 years ago
- A tool for profiling long STRs from short reads☆107Apr 19, 2021Updated 5 years ago
- A toolkit for Omics Genetic Analysis☆13Jan 25, 2025Updated last year
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 5 years ago
- A fast and memory-efficient method for haplotype assembly from long gapless reads.☆10Jun 11, 2018Updated 8 years ago
- R-package: Calculation of haplotype blocks and libraries☆36Jul 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 14 years ago
- 🎥 AI视频深度翻译 🚀✨☆11Aug 26, 2025Updated last year
- Scripts and reference files to type streptococcus pneumoniae☆11Aug 31, 2026Updated 2 months ago
- Tools for merging Tandem Repeat VCF files☆39Apr 30, 2025Updated last year
- Illumina read substitution and indel error corrector. Processes human WGS 45x depth reads in about 4 hours, resulting in the reads qualit…☆10Sep 17, 2026Updated last month
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆40Dec 27, 2023Updated 2 years ago
- Empirical Bayes methods for single cell data☆18Oct 12, 2020Updated 6 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆17Jan 4, 2025Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 6 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Code for performing PCA followed by CCA☆19Dec 2, 2018Updated 7 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated 2 years ago
- seqpac - A Framework for small RNA analysis in R using Sequence-Based Counts☆10Oct 12, 2026Updated 3 weeks ago