gymreklab / snpstr-imputationLinks
Scripts for analyses and figures for SNP STR Imputation manuscript
☆14Updated 7 years ago
Alternatives and similar repositories for snpstr-imputation
Users that are interested in snpstr-imputation are comparing it to the libraries listed below
Sorting:
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- ☆15Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Mutation rate analysis of autosomal loci☆14Updated 5 years ago
- Integrative analysis of complex structural variants☆22Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- ☆12Updated 10 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- ☆16Updated 7 months ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Toolkit for calling and analyzing de novo STR mutations☆14Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated last week
- Tools for merging Tandem Repeat VCF files☆33Updated 4 months ago
- ☆35Updated 4 years ago
- ☆23Updated 8 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- ☆19Updated 2 years ago
- Detecting NUMTs from WGS☆12Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- Fast and scalable variant annotation tool☆30Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago