gymreklab / snpstr-imputation
Scripts for analyses and figures for SNP STR Imputation manuscript
☆11Updated 6 years ago
Related projects: ⓘ
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆22Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- ☆14Updated last year
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆24Updated 4 years ago
- Upscaling SV detection to a multi-population level.☆21Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆11Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 5 months ago
- ☆15Updated 4 months ago
- PopSTR - A Population based microsatellite genotyper☆31Updated 10 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated last year
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆14Updated 12 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 3 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated this week
- toolkit to process gtf files☆16Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆16Updated 4 years ago
- ☆18Updated this week
- A method for measuring chromosome-specific telomere length from long reads☆20Updated 4 months ago
- Enabling differential allele-specific analysis☆11Updated 2 years ago
- ☆11Updated 5 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆26Updated 6 months ago
- A transposition caller.☆10Updated 11 months ago
- ☆15Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 3 years ago
- Population-wide Deletion Calling☆34Updated 2 weeks ago