Scripts for analyses and figures for SNP STR Imputation manuscript
☆14Jul 24, 2018Updated 7 years ago
Alternatives and similar repositories for snpstr-imputation
Users that are interested in snpstr-imputation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- Toolkit for genome-wide analysis of tandem repeats☆60Feb 19, 2026Updated last month
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 14 years ago
- Tools for merging Tandem Repeat VCF files☆37Apr 30, 2025Updated 11 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆12Apr 21, 2023Updated 2 years ago
- A tool for profiling long STRs from short reads☆105Apr 19, 2021Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated last year
- A Mathematica pipeline for genetic analysis in multiparental populations☆13Jan 7, 2025Updated last year
- R-package: Calculation of haplotype blocks and libraries☆35Jul 22, 2025Updated 8 months ago
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 8 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆18Jan 4, 2025Updated last year
- Code for performing PCA followed by CCA☆18Dec 2, 2018Updated 7 years ago
- Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data☆19May 28, 2021Updated 4 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated last year
- Empirical Bayes methods for single cell data☆17Oct 12, 2020Updated 5 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆11Apr 13, 2021Updated 4 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Readme☆10Mar 15, 2020Updated 6 years ago
- A toolkit for identifying recombination and recombinant genotypes☆25Dec 3, 2025Updated 3 months ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- Deep Variant as a Nextflow pipeline☆30Jul 24, 2020Updated 5 years ago
- ☆13Apr 18, 2022Updated 3 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated last year
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- ☆14May 3, 2024Updated last year