Reducing reference bias using multiple population reference genomes
☆34May 27, 2024Updated last year
Alternatives and similar repositories for reference_flow
Users that are interested in reference_flow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 2 months ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- ☆15Jun 29, 2021Updated 4 years ago
- The D4 Quantitative Data Format☆171Nov 28, 2025Updated 4 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 2 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Apr 15, 2021Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- use the noise☆15Apr 15, 2020Updated 5 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated last month
- Variant call adjudication☆16Jun 13, 2024Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆21Nov 1, 2019Updated 6 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Find and visualize rearrangements in DNA sequences☆55Dec 1, 2025Updated 4 months ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Mar 20, 2026Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆246Dec 20, 2024Updated last year
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13May 29, 2020Updated 5 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Sep 7, 2018Updated 7 years ago