langmead-lab / reference_flowLinks
Reducing reference bias using multiple population reference genomes
☆34Updated last year
Alternatives and similar repositories for reference_flow
Users that are interested in reference_flow are comparing it to the libraries listed below
Sorting:
- Population-wide Deletion Calling☆35Updated 9 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- ☆24Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- ☆11Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 6 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- ☆16Updated last year
- Benchmark structural variant calls against a reference set☆18Updated last week