broadinstitute / str-analysis
Scripts and utilities related to analyzing short tandem repeats (STRs).
☆30Updated last month
Related projects ⓘ
Alternatives and complementary repositories for str-analysis
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆45Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- ☆22Updated 3 years ago
- ☆39Updated 2 months ago
- Structural variant merging tool☆44Updated 2 months ago
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Structural variant caller☆54Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆33Updated 4 months ago
- python plotly Circos from VCF☆32Updated 4 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Set of tools to manipulate and visualize modified base bam files☆48Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆47Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆36Updated last month
- WDL workflows for variant calling and assembly using ONT☆28Updated last month
- ☆79Updated 6 months ago
- perSVade: personalized Structural Variation detection☆36Updated 4 months ago
- Structural Variant Index☆70Updated last week
- ☆29Updated 3 years ago
- ☆21Updated last week
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆37Updated 3 weeks ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- Miscellaneous scripts for applications of PacBio systems☆25Updated 2 years ago
- ☆51Updated 5 years ago
- Variant annotation and merging pipeline☆29Updated last week
- ☆36Updated 6 months ago
- Toolkit for calling structural variants using short or long reads☆96Updated 2 weeks ago