broadinstitute / str-analysisLinks
Scripts and utilities for analyzing tandem repeats (TRs).
☆42Updated this week
Alternatives and similar repositories for str-analysis
Users that are interested in str-analysis are comparing it to the libraries listed below
Sorting:
- ☆24Updated last year
- Structural variant merging tool☆57Updated last year
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- ☆51Updated 6 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆40Updated 4 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- ☆35Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- ☆44Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- ☆27Updated 9 months ago
- python plotly Circos from VCF☆40Updated last year
- Powerful statistics for VCF files☆73Updated 2 months ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Updated 5 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Updated 11 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated 2 months ago
- ☆38Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- WDL workflows for variant calling and assembly using ONT☆38Updated last week
- ☆27Updated 4 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Structural variant caller☆55Updated 4 years ago
- ☆38Updated last year