gymreklab / STRDenovoToolsLinks
Toolkit for calling and analyzing de novo STR mutations
☆17Updated 2 years ago
Alternatives and similar repositories for STRDenovoTools
Users that are interested in STRDenovoTools are comparing it to the libraries listed below
Sorting:
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last month
- Mutation rate analysis of autosomal loci☆15Updated 5 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 7 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆15Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- ☆16Updated 11 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆19Updated 4 years ago
- Tools for merging Tandem Repeat VCF files☆37Updated 7 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- ☆20Updated 2 years ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Updated 2 weeks ago
- ☆23Updated 5 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- ☆11Updated 2 years ago