GRONINGEN-MICROBIOME-CENTRE / DMP
Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)
☆33Updated 3 years ago
Alternatives and similar repositories for DMP:
Users that are interested in DMP are comparing it to the libraries listed below
- A shiny package for microbiome functional enrichment analysis☆37Updated 5 months ago
- ☆13Updated 4 months ago
- This is the supplementary code for CRC-multi-kingdom☆17Updated 3 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆27Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 11 months ago
- A microbiome analysis toolkit for R☆22Updated last year
- Professional Comprehensive Omics Data Analysis☆17Updated 4 months ago
- ☆32Updated last year
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 3 months ago
- R package to predict microbial loads☆15Updated last month
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆30Updated 2 years ago
- ☆16Updated 5 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Updated 2 years ago
- ☆22Updated 5 years ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- ☆23Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- gutSMASH☆53Updated 3 months ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆15Updated 2 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 5 years ago
- ☆19Updated 2 years ago