GRONINGEN-MICROBIOME-CENTRE / DMPView external linksLinks
Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from EGA (https://ega-archive.org/studies/EGAS00001005027) and Lifelines biobank (https://www.lifelines.nl/researcher)
☆34Jun 24, 2021Updated 4 years ago
Alternatives and similar repositories for DMP
Users that are interested in DMP are comparing it to the libraries listed below
Sorting:
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 5 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Jul 13, 2018Updated 7 years ago
- ☆18Nov 19, 2022Updated 3 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated 8 months ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- 生信常用分析☆13Aug 2, 2020Updated 5 years ago
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13May 11, 2024Updated last year
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- FOR my learing☆12Feb 4, 2026Updated last week
- This repository contains original codes for major analyses in the manuscript 'The multi-kingdom airway microbiome mediates the interactio…☆12Apr 27, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Source code for the crAssphage project☆50Nov 11, 2025Updated 3 months ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- Bioinformatics with R cookbook☆12Apr 3, 2019Updated 6 years ago
- ☆11Dec 15, 2025Updated 2 months ago
- ☆12Dec 4, 2023Updated 2 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 7 years ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 7 months ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- I often use some of the self-written programs.☆16Nov 13, 2025Updated 3 months ago
- a bucket of bioinformatics scripts☆13Updated this week
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Extract metadata from biosamples in NCBI☆17Apr 12, 2021Updated 4 years ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 3 months ago
- iMeta teaches you to plot☆57Apr 26, 2023Updated 2 years ago
- WGS Sequencing In Hadoop MapReduce☆15Oct 13, 2020Updated 5 years ago
- Free-access R books for beginners. Welcome to Fork it. Commercial use is forbidden!☆14Sep 16, 2018Updated 7 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- ☆19Nov 11, 2024Updated last year
- R package for fetching and parsing data of the Human Microbiome Compendium☆16Jan 24, 2025Updated last year
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆16Updated this week
- a gatk4 pipeline with NA12878 demo dateset ,conda environment used(no GPU)☆15Aug 28, 2019Updated 6 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago