raymondkiu / bioinformatics-toolsLinks
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix and suffix) etc
☆22Updated 2 months ago
Alternatives and similar repositories for bioinformatics-tools
Users that are interested in bioinformatics-tools are comparing it to the libraries listed below
Sorting:
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 9 months ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆26Updated 4 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated last month
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- Quality control plotting for long reads☆10Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Pangenome analysis of eukaryotes.☆20Updated 5 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19Updated 7 months ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- ☆35Updated 5 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Updated 3 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Updated 2 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 9 months ago
- Genome alignment and synteny plots☆33Updated 2 years ago