raymondkiu / bioinformatics-toolsLinks
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
☆21Updated 2 years ago
Alternatives and similar repositories for bioinformatics-tools
Users that are interested in bioinformatics-tools are comparing it to the libraries listed below
Sorting:
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 5 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated 3 weeks ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- Yet another Hi-C scaffolding tool☆21Updated 10 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆18Updated 3 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated 2 weeks ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- Genome-Genome circle synteny☆25Updated last year
- Pipeline for eukaryotic genome annotation based on external evidences☆13Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Quality control plotting for long reads☆10Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆26Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Dinoflagellate Annotation Workflow☆15Updated 2 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆11Updated 3 years ago
- ☆32Updated 4 years ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 11 months ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated this week
- ☆32Updated last year