Alternatives and similar repositories for bioinformatics-tools

Users that are interested in bioinformatics-tools are comparing it to the libraries listed below

• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆36Updated 6 months ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 10 months ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆30Updated 4 months ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated 2 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆32Updated 5 years ago
• rhysf / Diamond2GO
  Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…
  ☆24Updated last month
• gengit / PosiGene
  ☆26Updated 4 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated 2 weeks ago
• MrTomRod / orthofinder-tools
  Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …
  ☆19Updated 2 weeks ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆31Updated last year
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆33Updated 4 years ago
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆19Updated 8 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 4 years ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated last year
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆39Updated 4 months ago
• anonconda / TranSuite
  A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.
  ☆22Updated 4 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆19Updated 2 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago
• mbhall88 / pistis
  Quality control plotting for long reads
  ☆10Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• redsnic / WGA-LP
  A pipeline for whole genome assembly
  ☆16Updated 3 years ago
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆22Updated 5 years ago
• HuffordLab / GenomeQC
  ☆35Updated 5 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆45Updated 5 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆45Updated this week
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆27Updated 4 months ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago