Assembly methods for nanopore-based metagenomic sequencing: a comparative study
☆17May 18, 2020Updated 5 years ago
Alternatives and similar repositories for Assembly-methods-nanopore
Users that are interested in Assembly-methods-nanopore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆15Aug 28, 2024Updated last year
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Jan 14, 2022Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Aug 10, 2021Updated 4 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 5 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆33Jan 19, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Nov 16, 2023Updated 2 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- ☆36Nov 20, 2023Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Jan 15, 2026Updated 2 months ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Jul 8, 2025Updated 8 months ago
- Aim to implement a classifier which classifies an audio sample into speech or music.☆10Sep 17, 2019Updated 6 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Feb 17, 2026Updated last month
- ☆11Sep 25, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Dec 16, 2024Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 2 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆43Jul 23, 2021Updated 4 years ago
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Mar 15, 2021Updated 5 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 4 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individua…☆10Feb 21, 2018Updated 8 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆910May 2, 2025Updated 10 months ago
- A QIIME 2 implementation of SMURF☆13Apr 27, 2022Updated 3 years ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Oct 15, 2021Updated 4 years ago