adlape95 / Assembly-methods-nanopore
Assembly methods for nanopore-based metagenomic sequencing: a comparative study
☆18Updated 4 years ago
Alternatives and similar repositories for Assembly-methods-nanopore:
Users that are interested in Assembly-methods-nanopore are comparing it to the libraries listed below
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆33Updated 3 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated last month
- IS mapping software☆53Updated 3 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆71Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆87Updated this week
- ☆79Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆28Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆56Updated this week
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆42Updated last year
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆39Updated 4 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated 3 weeks ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆45Updated 9 months ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆42Updated 5 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆51Updated 8 months ago
- A toolbox for comparative genomics.☆99Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- ☆57Updated 3 weeks ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆59Updated 4 months ago
- Reorients assembled microbial sequences☆106Updated this week
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆38Updated last month