Ecogenomics / BamMLinks
Metagenomics-focused BAM file manipulation
☆15Updated 6 years ago
Alternatives and similar repositories for BamM
Users that are interested in BamM are comparing it to the libraries listed below
Sorting:
- Genomic Assemblies Merger for NGS☆26Updated last year
 - Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
 - ☆18Updated 8 years ago
 - Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
 - blast, shmlast☆21Updated 5 years ago
 - SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month
 - Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
 - kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
 - Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
 - Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
 - Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated this week
 - Hagfish - assess an assembly through creative use of coverage plots☆36Updated 13 years ago
 - Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated 2 years ago
 - Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
 - Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
 - Read contamination removal☆25Updated last year
 - Tool for visualising assemblies.☆17Updated 10 years ago
 - Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
 - A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
 - NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
 - Find Unique genomic Regions☆30Updated last week
 - Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
 - Indel-aware consensus for aligned BAM☆21Updated 2 months ago
 - CAMITAX: Taxon labels for microbial genomes☆30Updated last year
 - reference free variant assembly☆34Updated 2 years ago
 - Rapid discovery of reciprocal best blast pairs.☆10Updated 11 months ago
 - Pipeline for Evaluating Prokaryotic References☆11Updated 9 years ago
 - Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
 - Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
 - Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago