This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)
☆38Apr 7, 2026Updated 2 months ago
Alternatives and similar repositories for kegg-pathways-completeness-tool
Users that are interested in kegg-pathways-completeness-tool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 20, 2023Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆57May 24, 2026Updated 3 weeks ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 5 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆76Updated this week
- ☆14Sep 2, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆18Jun 10, 2026Updated last week
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated last week
- MAG Circularization Method☆33Nov 4, 2025Updated 7 months ago
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated 2 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Updated this week
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 9 years ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated last month
- ☆51May 29, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CLI tool to annotate genes with KOfam☆99Jun 6, 2023Updated 3 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Tool for unsupervised contig binning from viral metagenomes☆18Oct 22, 2021Updated 4 years ago
- Toolbox for comparative genomics of MAGs☆91Apr 28, 2026Updated last month
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆54May 16, 2026Updated last month
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 5 months ago
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 3 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Jun 12, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 10 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆215Jun 8, 2026Updated last week
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated 2 months ago
- ☆65Apr 14, 2026Updated 2 months ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- ☆15Oct 14, 2023Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated 3 months ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- ☆104Updated this week
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆129May 28, 2026Updated 3 weeks ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90May 11, 2026Updated last month
- ☆18Nov 7, 2025Updated 7 months ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated last year