EBI-Metagenomics / kegg-pathways-completeness-toolLinks
☆22Updated 5 months ago
Alternatives and similar repositories for kegg-pathways-completeness-tool
Users that are interested in kegg-pathways-completeness-tool are comparing it to the libraries listed below
Sorting:
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- MAG Circularization Method☆33Updated 3 years ago
- scripts for microbiome analysis☆11Updated 11 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- ☆26Updated 2 years ago
- ☆12Updated 3 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 4 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆18Updated 8 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- Bacterial GWAS analysis☆40Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆37Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated last month
- Plot microbiome time series in parallel☆26Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- ☆13Updated 7 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- ☆22Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 11 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆45Updated 2 years ago