Alternatives and similar repositories for kegg-pathways-completeness-tool:

Users that are interested in kegg-pathways-completeness-tool are comparing it to the libraries listed below

• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆22Updated 6 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆32Updated 2 years ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆31Updated 5 months ago
• yosuken / MAGRE
  ☆12Updated 3 years ago
• dgittins / CANT-HYD-HydrocarbonBiodegradation
  Hydrocarbon biodegradation gene annotation
  ☆15Updated 2 years ago
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated 7 months ago
• gcremers / metascan
  Metabolic scanning and annotation of Metagenomes
  ☆10Updated 2 months ago
• AlexanderLabWHOI / EukHeist
  ☆25Updated last year
• aweimann / traitar
  ☆22Updated last year
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆15Updated last week
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆31Updated 4 months ago
• elizabethmcd / metabolisHMM
  Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
  ☆18Updated 3 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆22Updated 10 months ago
• michaelkyu / MobMess
  ☆19Updated 3 years ago
• statdivlab / happi
  A Hierarchical Approach to Pangenomics Inference
  ☆11Updated 10 months ago
• KasperSkytte / mmgenome2
  Tools for extracting individual genomes from metagenomes
  ☆17Updated last year
• yosuken / ViPTreeGen
  a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree
  ☆25Updated 2 years ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆22Updated 2 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 4 months ago
• leaemiliepradier / PlasForest
  A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
  ☆18Updated last year
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆16Updated 3 months ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆36Updated this week
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…
  ☆43Updated this week
• lmc297 / bactaxR
  Bacterial taxonomy construction and evaluation in R
  ☆13Updated last year
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 2 years ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆34Updated 3 weeks ago
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆11Updated 2 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago