This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)
☆40Oct 1, 2026Updated 2 weeks ago
Alternatives and similar repositories for kegg-pathways-completeness-tool
Users that are interested in kegg-pathways-completeness-tool are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 20, 2023Updated 3 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated last month
- The binning tool with dynamic contrastive learning and deep language model☆26Oct 1, 2026Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆65Sep 1, 2026Updated last month
- ☆85Aug 23, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 9 months ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Updated this week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Updated this week
- MAG Circularization Method☆33Nov 4, 2025Updated 11 months ago
- MAGScoT - a MAG scoring and refinement tool☆50Apr 8, 2026Updated 6 months ago
- More scalable dereplication for metagenome assembled genomes☆89Updated this week
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- ☆57Sep 17, 2026Updated last month
- ☆15Oct 14, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆32Sep 1, 2026Updated last month
- ☆119Updated this week
- ☆66Updated this week
- An algorithm for clustering metagenomic sequences.☆43Aug 5, 2026Updated 2 months ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Oct 7, 2026Updated last week
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆14Sep 2, 2021Updated 5 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 5 months ago
- Leviathan: Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscripto…☆28Oct 6, 2026Updated last week
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆95May 11, 2026Updated 5 months ago
- Toolbox for comparative genomics of MAGs☆93Jul 30, 2026Updated 2 months ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 3 months ago
- Tool to estimate genome quality of microbial eukaryotes☆48Aug 14, 2026Updated 2 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆56Sep 28, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 10 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆58May 8, 2026Updated 5 months ago
- ☆53May 29, 2026Updated 4 months ago
- ⚡🦠🧬📇 Rapid microbial genomes-to-report pipeline☆75Updated this week
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated last month
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- ☆19Updated this week