donovan-h-parks / PhyloRankLinks
Assign taxonomic ranks based on evolutionary divergence.
☆23Updated 3 years ago
Alternatives and similar repositories for PhyloRank
Users that are interested in PhyloRank are comparing it to the libraries listed below
Sorting:
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- Automatic eukaryotic taxonomic classification☆29Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- ☆16Updated 5 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 2 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Calculate assocations between genes and traits☆23Updated 3 months ago
- ☆25Updated 6 years ago
- Discover and annotate the virome☆43Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Bacterial GWAS analysis☆40Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- ☆43Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆37Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated last year
- Gene-flank analysis tool☆27Updated 6 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago