Assign taxonomic ranks based on evolutionary divergence.
☆24Mar 3, 2026Updated 8 months ago
Alternatives and similar repositories for PhyloRank
Users that are interested in PhyloRank are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FEDKEA: Fine-tuned ESM-2 and Distance-based KNN for Enzyme Annotation☆12Oct 31, 2025Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- ☆20Updated this week
- A Pyrodigal extension to predict genes in RNA viruses.☆12May 3, 2026Updated 6 months ago
- ☆28Feb 27, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GTDB taxonomy taxdump files with trackable TaxIds☆65Apr 18, 2026Updated 6 months ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆21May 11, 2022Updated 4 years ago
- ☆11May 10, 2025Updated last year
- ☆15Updated this week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 4 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated 2 months ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GraftM - Rapid community profiles from metagenomes☆56Nov 6, 2025Updated last year
- A hybrid summary method for reconstructing species tree from gene trees☆10Jan 6, 2021Updated 5 years ago
- ☆57Sep 17, 2026Updated last month
- ☆13Dec 22, 2025Updated 10 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆71Aug 10, 2021Updated 5 years ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 10 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated last year
- viralFlye pipeline☆19Aug 12, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- Pipeline for major biological analyses.☆35Mar 30, 2022Updated 4 years ago
- Protal is tool for taxonomic profiling from whole-genome shotgun sequencing data. With GTDB marker genes as reference, protal is able to …☆16Aug 10, 2026Updated 2 months ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 8 years ago
- taxonomic classes for Python☆11Aug 30, 2021Updated 5 years ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 4 years ago
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated 2 years ago
- ☆10Oct 10, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 5 years ago
- Pilea: profiling bacterial growth dynamics from metagenomes with sketching☆13Oct 21, 2026Updated 2 weeks ago
- Bioinformatics program inStrain☆193Oct 20, 2026Updated 2 weeks ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- CarveMe: genome-scale metabolic model reconstruction☆224Sep 12, 2025Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆28Nov 19, 2025Updated 11 months ago
- A toolbox for working with genome trees.☆10May 20, 2026Updated 5 months ago