donovan-h-parks / PhyloRankLinks
Assign taxonomic ranks based on evolutionary divergence.
☆23Updated 3 years ago
Alternatives and similar repositories for PhyloRank
Users that are interested in PhyloRank are comparing it to the libraries listed below
Sorting:
- Discover and annotate the virome☆44Updated 2 weeks ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- ☆53Updated 4 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 9 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 months ago
- Improving genome bins through the combination of different binning programs☆31Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆29Updated 8 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Phage-Host Interaction Search Tool☆27Updated last year
- Automatic eukaryotic taxonomic classification☆29Updated 2 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- strain-level analysis tools☆38Updated 8 months ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- Bacterial GWAS analysis☆42Updated this week