ctb / 2025-ncbi-rest-apiLinks
Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t
☆12Updated 9 months ago
Alternatives and similar repositories for 2025-ncbi-rest-api
Users that are interested in 2025-ncbi-rest-api are comparing it to the libraries listed below
Sorting:
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- software to identify primers that can distinguish genomes☆20Updated this week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 9 months ago
- metagenome population recombination rate estimation pipeline☆12Updated 3 weeks ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- ☆20Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆15Updated 3 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆15Updated last month
- Organism-specific interpretation of AMR genotypes☆14Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Generate basic stats for an assembly.☆13Updated 2 years ago
- Neptune: Genomic Signature Discovery☆20Updated last year
- Parallel/Homoplasic SNP Finder☆20Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆16Updated last week
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆11Updated 11 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated last week
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆16Updated this week
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆13Updated last year