Metagenomic Binning Algorithm
☆55Aug 29, 2026Updated last week
Alternatives and similar repositories for rosella
Users that are interested in rosella are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆55Jul 10, 2026Updated last month
- Strain resolver for metagenomics☆82Aug 2, 2024Updated 2 years ago
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 4 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆21Jun 24, 2026Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆49Apr 8, 2026Updated 4 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆94May 11, 2026Updated 3 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 2 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆39Apr 26, 2026Updated 4 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆263May 13, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Aug 28, 2026Updated last week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72Aug 27, 2026Updated last week
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 10 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆167Jul 3, 2026Updated 2 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Updated this week
- ☆13Feb 29, 2024Updated 2 years ago
- ☆33Jul 16, 2023Updated 3 years ago
- An algorithm for clustering metagenomic sequences.☆43Aug 5, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- GTDB => NCBI☆16Nov 14, 2024Updated last year
- ☆65Feb 27, 2024Updated 2 years ago
- ☆13Jul 23, 2026Updated last month
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Jul 14, 2026Updated last month
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆37Aug 21, 2026Updated 2 weeks ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 9 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Updated this week
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆40Aug 7, 2026Updated 3 weeks ago