cmkobel / CompareM2Links
🦠📇 Microbial genomes-to-report pipeline
☆56Updated this week
Alternatives and similar repositories for CompareM2
Users that are interested in CompareM2 are comparing it to the libraries listed below
Sorting:
- ☆24Updated 6 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Tool to estimate genome quality of microbial eukaryotes☆37Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last month
- Bacterial GWAS analysis☆40Updated last week
- Unified Human Gut Virome Catalog☆31Updated 10 months ago
- ☆45Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆44Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆65Updated 2 weeks ago
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆79Updated 2 weeks ago
- Discover and annotate the virome☆42Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last month
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- ☆71Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 2 weeks ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- ☆20Updated 9 months ago
- Bifrost graph gene caller.☆95Updated 8 months ago
- ☆32Updated 3 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago