π¦ π§¬π§βπ»π Microbial genomes-to-report pipeline
β75Mar 14, 2026Updated last month
Alternatives and similar repositories for CompareM2
Users that are interested in CompareM2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A hybrid assembly and MAG recovery pipeline (and more!)β106Mar 31, 2026Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.β54Sep 7, 2025Updated 7 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassemblyβ74Mar 3, 2026Updated last month
- Bifrost graph gene caller.β98Mar 29, 2026Updated 2 weeks ago
- π«§π§¬ From fragmented assemblies to high-quality bacteriophage genomesβ82Dec 4, 2025Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPsβ35Dec 4, 2025Updated 4 months ago
- β17May 13, 2025Updated 11 months ago
- β26Jan 30, 2025Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.β87Mar 12, 2026Updated last month
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insightsβ17Nov 24, 2025Updated 4 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.β106Jan 22, 2026Updated 2 months ago
- β81Apr 7, 2026Updated last week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!β42Feb 26, 2026Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.β148Jan 9, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]β47Apr 1, 2025Updated last year
- Precise host read removalβ119Mar 28, 2026Updated 2 weeks ago
- BEAV: Bacterial Element Annotation reVampedβ76Aug 21, 2025Updated 7 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomesβ108May 23, 2025Updated 10 months ago
- Reorients assembled microbial sequencesβ136Aug 21, 2025Updated 7 months ago
- geNomad: Identification of mobile genetic elementsβ301Mar 29, 2026Updated 2 weeks ago
- motus - a tool for marker gene-based OTU (mOTU) profilingβ173Mar 13, 2026Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)β71Mar 9, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.β248Oct 12, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Find clustered hits from a BLAST searchβ136Jan 16, 2026Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.β301Feb 3, 2026Updated 2 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023β138Updated this week
- PanTax: Strain-level metagenomic profiling using pangenome graphsβ50Mar 26, 2026Updated 2 weeks ago
- β15Oct 14, 2023Updated 2 years ago
- A package to annotate protein sequencesβ63Feb 23, 2025Updated last year
- Discovery of conserved gene clusters in multiple genomesβ127Jan 16, 2026Updated 2 months ago
- Genome size estimation from long read overlapsβ82Updated this week
- β25Jun 20, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A toolkit for prokaryotic comparative genomicsβ51Feb 23, 2026Updated last month
- Binning Virus Genomes from Metagenomesβ72Jul 13, 2022Updated 3 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaeaβ104Jun 25, 2023Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomesβ13Jun 10, 2021Updated 4 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomesβ185Updated this week
- A new high-resolution long-read metagenome assembler for even noisy readsβ145Apr 5, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!β181Mar 17, 2026Updated 3 weeks ago