cmkobel / CompareM2Links
🦠🧬🧑💻📇 Microbial genomes-to-report pipeline
☆73Updated 3 months ago
Alternatives and similar repositories for CompareM2
Users that are interested in CompareM2 are comparing it to the libraries listed below
Sorting:
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Updated 5 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆84Updated 2 weeks ago
- ARG normalization by mapping to the ARO ontology.☆62Updated 6 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago
- Precise host read removal☆115Updated 5 months ago
- More scalable dereplication for metagenome assembled genomes☆76Updated last month
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Updated 2 years ago
- Bifrost graph gene caller.☆98Updated 3 weeks ago
- ☆81Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated 3 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 3 weeks ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 8 months ago
- Unified Human Gut Virome Catalog☆41Updated 3 months ago
- A listing of software, tools and databases useful for virome analysis☆60Updated this week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆40Updated 2 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆79Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆97Updated 8 months ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Updated last week
- A tool for removing redundant genomes from a set of assemblies☆78Updated 5 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 10 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆36Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated last week
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago