cmkobel / CompareM2Links
🦠🧬🧑💻📇 Microbial genomes-to-report pipeline
☆59Updated this week
Alternatives and similar repositories for CompareM2
Users that are interested in CompareM2 are comparing it to the libraries listed below
Sorting:
- alignment-free coverage calculation for metagenomic binning >100 times faster☆47Updated 5 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Calculate assocations between genes and traits☆25Updated 5 months ago
- Discover and annotate the virome☆46Updated last month
- Bacterial GWAS analysis☆43Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Recombination-free trees☆59Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 3 weeks ago
- Unified Human Gut Virome Catalog☆34Updated last year
- Precise host read removal☆103Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Bifrost graph gene caller.☆96Updated 11 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- More scalable dereplication for metagenome assembled genomes☆65Updated this week
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆43Updated 2 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- IslandPath standalone software☆33Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 5 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 3 weeks ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- whole genome MLST analysis☆46Updated 2 months ago