TAXnomic Profile Aggregation and STAndardisation
☆43May 2, 2026Updated last week
Alternatives and similar repositories for taxpasta
Users that are interested in taxpasta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repo with just adapter sequences☆15Jul 7, 2025Updated 10 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆26Feb 6, 2023Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- µbinfie blog☆19Jul 21, 2025Updated 9 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 30, 2026Updated last week
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 2 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Oct 4, 2024Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆70Apr 28, 2026Updated last week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 8 months ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Genome size estimation from long read overlaps☆86May 1, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆17Updated this week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Apr 24, 2026Updated 2 weeks ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆104Apr 23, 2026Updated 2 weeks ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated 8 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Apr 29, 2026Updated last week
- Rapid & standardized genome annotation using protein structural information☆63May 2, 2026Updated last week
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90Mar 12, 2026Updated last month
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆214Apr 24, 2026Updated 2 weeks ago
- Precise host read removal☆122Apr 13, 2026Updated 3 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Organism-specific interpretation of AMR genotypes☆16Mar 17, 2026Updated last month
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- ☆31Updated this week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆185Apr 30, 2026Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- A tool for removing redundant genomes from a set of assemblies☆80Sep 10, 2025Updated 7 months ago