TAXnomic Profile Aggregation and STAndardisation
☆43May 2, 2026Updated 5 months ago
Alternatives and similar repositories for taxpasta
Users that are interested in taxpasta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- µbinfie blog☆19Jul 21, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆21Sep 16, 2026Updated last month
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Taxonomic Classification of Bacteria and Archaea Genomes☆19Aug 17, 2026Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 4 months ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Oct 8, 2026Updated last week
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 3 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 7 months ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Updated this week
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆192Oct 8, 2026Updated last week
- Calculate confidence scores from Kraken2 output☆25Feb 18, 2024Updated 2 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 8 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 7, 2026Updated last week
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆108Updated this week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆39Aug 21, 2026Updated last month
- Fasten toolkit, for streaming operations on fastq files☆85Updated this week
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆196Sep 8, 2026Updated last month
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 5 months ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆267Updated this week
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆95May 11, 2026Updated 5 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆54Jun 10, 2026Updated 4 months ago