taxprofiler / taxpasta
TAXnomic Profile Aggregation and STAndardisation
β39Updated 6 months ago
Alternatives and similar repositories for taxpasta
Users that are interested in taxpasta are comparing it to the libraries listed below
Sorting:
- π»βπ¨ Calculate distance matrix from ChewBBACA cgMLST allele call tablesβ27Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenomeβ48Updated 2 years ago
- Output FASTQ summary statistics in JSON formatβ30Updated 2 years ago
- Get microbial sequence data easier and fasterβ28Updated 5 years ago
- π π« Trim, circularise and orient long read bacterial genome assembliesβ26Updated 5 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPsβ27Updated 6 months ago
- Fast and space-efficient taxonomic classification of long readsβ43Updated last week
- Gene-flank analysis toolβ27Updated 5 months ago
- Genome size estimation from long read overlapsβ56Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.β51Updated last month
- Remove human reads from a sequencing runβ40Updated 7 months ago
- Predict plasmids from uncorrected long read dataβ39Updated 5 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignmentβ59Updated 2 months ago
- Recombination-free treesβ58Updated last month
- strain-level analysis toolsβ36Updated 6 months ago
- frame-shift correction for long-read (meta)genomicsβ33Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasetsβ29Updated 10 months ago
- Bacterial GWAS analysisβ40Updated 3 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomesβ28Updated this week
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specieβ¦β29Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ28Updated last year
- Working with the outputs of sourmash in Rβ27Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological dataβ34Updated 5 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxaβ38Updated last month
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and meβ¦β23Updated 2 years ago
- Automatic eukaryotic taxonomic classificationβ28Updated last week
- Ley Lab MetaGenome Profiler DataBase generatorβ49Updated 2 years ago
- Assembly based core genome SNP alignments for bacteriaβ25Updated 5 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic dataβ24Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genesβ35Updated 3 weeks ago