taxprofiler / taxpastaLinks
TAXnomic Profile Aggregation and STAndardisation
☆41Updated last week
Alternatives and similar repositories for taxpasta
Users that are interested in taxpasta are comparing it to the libraries listed below
Sorting:
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Recombination-free trees☆59Updated 5 months ago
- frame-shift correction for long-read (meta)genomics☆34Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- Bacterial GWAS analysis☆43Updated last month
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆59Updated last month
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated 2 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- Remove human reads from a sequencing run☆40Updated last month
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- Genome size estimation from long read overlaps☆59Updated last week
- strain-level analysis tools☆39Updated 10 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated last month
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated 2 months ago