DaehwanKimLab / hisat2Links
Graph-based alignment (Hierarchical Graph FM index)
☆513Updated 3 weeks ago
Alternatives and similar repositories for hisat2
Users that are interested in hisat2 are comparing it to the libraries listed below
Sorting:
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆453Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆524Updated last month
- Transcript assembly and quantification for RNA-Seq☆464Updated this week
- Tools to process and analyze deep sequencing data.☆735Updated 2 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆432Updated last month
- A quality control analysis tool for high throughput sequencing data☆537Updated last week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆438Updated 9 months ago
- The next version of bwa-mem☆784Updated 3 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆486Updated last month
- ☆266Updated last month
- Java utilities for Bioinformatics☆512Updated last month
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆531Updated 2 weeks ago
- Strelka2 germline and somatic small variant caller☆382Updated 3 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆872Updated 7 months ago
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆461Updated last month
- Near-optimal RNA-Seq quantification☆701Updated 5 months ago
- Fast genome-wide functional annotation through orthology assignment☆658Updated 3 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆843Updated last year
- A single molecule sequence assembler for genomes large and small.☆691Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆522Updated 2 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆844Updated 4 months ago
- Structural variant and indel caller for mapped sequencing data☆440Updated 2 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆423Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆552Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆755Updated 2 months ago
- Structural variation caller using third generation sequencing☆619Updated last month
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆505Updated last week
- De novo assembler for single molecule sequencing reads using repeat graphs☆872Updated 5 months ago
- ☆318Updated 5 years ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆485Updated this week