DaehwanKimLab / hisat2
Graph-based alignment (Hierarchical Graph FM index)
☆496Updated 3 months ago
Alternatives and similar repositories for hisat2:
Users that are interested in hisat2 are comparing it to the libraries listed below
- Transcript assembly and quantification for RNA-Seq☆419Updated 3 weeks ago
- Fast genome-wide functional annotation through orthology assignment☆596Updated 10 months ago
- ☆235Updated 9 months ago
- Tools to process and analyze deep sequencing data.☆703Updated last week
- The next version of bwa-mem☆741Updated 7 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆430Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆725Updated 3 weeks ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆488Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆814Updated 6 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆409Updated 2 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆797Updated 8 months ago
- TransDecoder source☆285Updated 5 months ago
- Structural variation caller using third generation sequencing☆582Updated this week
- Customizable workflows based on snakemake and python for the analysis of NGS data☆394Updated this week
- Java utilities for Bioinformatics☆495Updated last week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆458Updated 2 weeks ago
- parallel fastq-dump wrapper☆288Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆540Updated 8 months ago
- Strelka2 germline and somatic small variant caller☆364Updated 3 years ago
- Near-optimal RNA-Seq quantification☆673Updated 3 months ago
- Genome assembly evaluation tool☆423Updated 4 months ago
- RNA-seq workflow using STAR and DESeq2☆337Updated 7 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆426Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆490Updated last week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆584Updated last month
- Phylogenetic orthology inference for comparative genomics☆742Updated 4 months ago
- A quality control analysis tool for high throughput sequencing data☆485Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆400Updated 2 months ago
- A complete pipeline for metagenomic analysis☆398Updated this week