DaehwanKimLab / hisat2Links
Graph-based alignment (Hierarchical Graph FM index)
☆525Updated 2 weeks ago
Alternatives and similar repositories for hisat2
Users that are interested in hisat2 are comparing it to the libraries listed below
Sorting:
- The next version of bwa-mem☆816Updated 3 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆539Updated 2 weeks ago
- Tools to process and analyze deep sequencing data.☆752Updated 6 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆460Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆442Updated 6 months ago
- Transcript assembly and quantification for RNA-Seq☆485Updated last month
- A quality control analysis tool for high throughput sequencing data☆578Updated last month
- Tools for handling Unique Molecular Identifiers in NGS data sets☆536Updated last week
- Trinity RNA-Seq de novo transcriptome assembly☆881Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆900Updated 9 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Updated 3 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆556Updated 3 weeks ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆457Updated last year
- Structural variation caller using third generation sequencing☆634Updated last month
- ☆286Updated 3 months ago
- bedtools - the swiss army knife for genome arithmetic☆1,022Updated 10 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆862Updated this week
- A fast and sensitive gapped read aligner☆769Updated last week
- Fast genome-wide functional annotation through orthology assignment☆697Updated 7 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆530Updated this week
- parallel fastq-dump wrapper☆303Updated 2 years ago
- The second version of the Kraken taxonomic sequence classification system☆866Updated last week
- Near-optimal RNA-Seq quantification☆720Updated 3 weeks ago
- A single molecule sequence assembler for genomes large and small.☆697Updated 2 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆768Updated last week
- A One-Click System for Analyzing Loop-Resolution Hi-C Experiments☆475Updated 5 months ago
- ☆320Updated 5 years ago
- Phylogenetic orthology inference for comparative genomics☆829Updated 6 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆887Updated last month
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆430Updated last year