gpertea / stringtie
Transcript assembly and quantification for RNA-Seq
☆384Updated this week
Related projects ⓘ
Alternatives and complementary repositories for stringtie
- TransDecoder source☆276Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆530Updated 4 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆421Updated 8 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆444Updated 3 weeks ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆375Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆393Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆262Updated 5 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆257Updated last year
- Fast genome-wide functional annotation through orthology assignment☆572Updated 6 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆243Updated last year
- parallel fastq-dump wrapper☆283Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆253Updated 4 months ago
- Another Gtf/Gff Analysis Toolkit☆462Updated last month
- Tools for fast and flexible genome assembly scaffolding and improvement☆473Updated 9 months ago
- Structural variation caller using third generation sequencing☆561Updated this week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆364Updated last week
- Fast and accurate gene fusion detection from RNA-Seq data☆226Updated 2 weeks ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆294Updated last year
- ☆220Updated 5 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆246Updated last month
- Genome Assembly and Annotation Service code☆202Updated 11 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆213Updated 3 years ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆472Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆199Updated this week
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆386Updated 7 months ago
- Count bases in BAM/CRAM files☆305Updated 2 years ago
- ☆231Updated this week
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆228Updated 3 weeks ago
- Pilon is an automated genome assembly improvement and variant detection tool☆341Updated 2 years ago
- RNA-seq workflow using STAR and DESeq2☆327Updated 3 months ago