daler / gffutilsLinks
GFF and GTF file manipulation and interconversion
☆299Updated last year
Alternatives and similar repositories for gffutils
Users that are interested in gffutils are comparing it to the libraries listed below
Sorting:
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆260Updated 3 weeks ago
- A tool to circularize genome assemblies☆242Updated last year
- TransDecoder source☆291Updated 8 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆254Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆278Updated 7 months ago
- An overview of all nanopack tools☆252Updated 2 years ago
- BEDOPS: high-performance genomic feature operations☆337Updated last month
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆267Updated 5 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- Plot structural variant signals from many BAMs and CRAMs☆543Updated 10 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆416Updated 5 months ago
- Toolset for SV simulation, comparison and filtering☆379Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆201Updated last week
- Count bases in BAM/CRAM files☆317Updated 3 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆226Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆232Updated 4 years ago
- Genome Assembly and Annotation Service code☆212Updated last year
- 3D de novo assembly (3D DNA) pipeline☆212Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆268Updated last year
- Read trimming tool for Illumina NGS data.☆136Updated 10 years ago
- Tool to plot synteny and structural rearrangements between genomes☆306Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆275Updated 11 months ago
- Structural variant toolkit for VCFs☆357Updated last month
- Eukaryotic Genome Annotation Pipeline☆351Updated last week
- Bayesian haplotype-based mutation calling☆311Updated 2 months ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆210Updated 5 years ago