GFF and GTF file manipulation and interconversion
☆320Mar 31, 2026Updated 4 months ago
Alternatives and similar repositories for gffutils
Users that are interested in gffutils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆495Jul 7, 2026Updated last month
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Updated this week
- Parsing tools for GTF (gene transfer format) files☆129Jul 8, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆551Aug 1, 2023Updated 3 years ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆585Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆283Jul 7, 2026Updated last month
- Incubator for useful bioinformatics code, primarily in Python and R☆645Feb 5, 2025Updated last year
- Performant Pythonic GenomicRanges☆492Apr 23, 2026Updated 4 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆907Aug 19, 2026Updated last week
- GenomeTools genome analysis system.☆342Nov 10, 2025Updated 9 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,489Updated this week
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- cython + htslib == fast VCF and BCF processing☆446Jun 25, 2026Updated 2 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool to circularize genome assemblies☆257Apr 6, 2024Updated 2 years ago
- A fast multi-threaded k-mer counter☆551Mar 20, 2024Updated 2 years ago
- python module to plot beautiful and highly customizable genome browser tracks☆898Updated this week
- Eukaryotic Genome Annotation Pipeline☆400Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,559Jun 1, 2025Updated last year
- GFF and GVF specification documents☆222Jun 18, 2024Updated 2 years ago
- Python programs for processing GFF3 files☆105Jul 29, 2026Updated last month
- Efficient pythonic random access to fasta subsequences☆488Mar 19, 2026Updated 5 months ago
- A fast approximate aligner for long DNA sequences☆290Oct 11, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126May 4, 2026Updated 3 months ago
- Fast genome analysis from unassembled short reads☆325Apr 8, 2024Updated 2 years ago
- BEDOPS: high-performance genomic feature operations☆375Apr 29, 2025Updated last year
- Tools to process and analyze deep sequencing data.☆763Aug 19, 2026Updated last week
- Transcript assembly and quantification for RNA-Seq☆529Aug 9, 2026Updated 3 weeks ago
- Near-optimal RNA-Seq quantification☆769Jul 12, 2026Updated last month
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆927Updated this week
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆555Updated this week
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Program for aligning DNA sequences, a pairwise aligner.☆252May 20, 2026Updated 3 months ago
- source code for EVM☆128Nov 29, 2024Updated last year
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- Align proteins to genomes with splicing and frameshift☆417Jan 5, 2026Updated 7 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,590Aug 21, 2026Updated last week
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆299May 28, 2026Updated 3 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆186Jul 21, 2026Updated last month