daler / gffutilsLinks
GFF and GTF file manipulation and interconversion
☆314Updated last week
Alternatives and similar repositories for gffutils
Users that are interested in gffutils are comparing it to the libraries listed below
Sorting:
- GFF and GVF specification documents☆219Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆256Updated 6 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆290Updated last month
- TransDecoder source☆300Updated 4 months ago
- Read trimming tool for Illumina NGS data.☆149Updated 10 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆285Updated 5 months ago
- Count bases in BAM/CRAM files☆323Updated 4 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆455Updated last year
- BEDOPS: high-performance genomic feature operations☆359Updated 9 months ago
- Bayesian haplotype-based mutation calling☆323Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆232Updated 6 months ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆293Updated 5 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 4 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆219Updated 2 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆129Updated 5 years ago
- Documentation for the ANNOVAR software☆245Updated 6 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆186Updated 2 weeks ago
- Windowed Adaptive Trimming for fastq files using quality☆227Updated 8 years ago
- An overview of all nanopack tools☆278Updated 2 years ago
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆348Updated last month
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated this week
- Program for aligning DNA sequences, a pairwise aligner.☆239Updated 7 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆202Updated this week
- ☆302Updated last week
- A tool to circularize genome assemblies☆251Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated this week