GFF and GTF file manipulation and interconversion
☆315Mar 31, 2026Updated last week
Alternatives and similar repositories for gffutils
Users that are interested in gffutils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parsing tools for GTF (gene transfer format) files☆128Updated this week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆468Mar 15, 2026Updated 3 weeks ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Mar 16, 2025Updated last year
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆568Jan 13, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆268Mar 15, 2026Updated 3 weeks ago
- Performant Pythonic GenomicRanges☆494Jan 27, 2026Updated 2 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆885Apr 1, 2026Updated last week
- Incubator for useful bioinformatics code, primarily in Python and R☆644Feb 5, 2025Updated last year
- GenomeTools genome analysis system.☆334Nov 10, 2025Updated 4 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,437Mar 28, 2026Updated last week
- cython + htslib == fast VCF and BCF processing☆439Feb 23, 2026Updated last month
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- A tool to circularize genome assemblies☆253Apr 6, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- A fast multi-threaded k-mer counter☆532Mar 20, 2024Updated 2 years ago
- Python programs for processing GFF3 files☆104Dec 15, 2025Updated 3 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆870Jul 10, 2024Updated last year
- Toolkit for processing sequences in FASTA/Q formats☆1,534Jun 1, 2025Updated 10 months ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- Eukaryotic Genome Annotation Pipeline☆383Feb 12, 2026Updated last month
- GFF and GVF specification documents☆220Jun 18, 2024Updated last year
- Efficient pythonic random access to fasta subsequences☆483Mar 19, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Fast genome analysis from unassembled short reads☆317Apr 8, 2024Updated 2 years ago
- Tools to process and analyze deep sequencing data.☆753Jul 23, 2025Updated 8 months ago
- Near-optimal RNA-Seq quantification☆755Mar 16, 2026Updated 3 weeks ago
- Transcript assembly and quantification for RNA-Seq☆495Dec 26, 2025Updated 3 months ago
- BEDOPS: high-performance genomic feature operations☆365Apr 29, 2025Updated 11 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆876Mar 11, 2026Updated 3 weeks ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Mar 22, 2026Updated 2 weeks ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Mar 30, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- source code for EVM☆122Nov 29, 2024Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆243Mar 27, 2026Updated last week
- A genomic k-mer counter (and sequence utility) with nice features.☆165Jul 4, 2025Updated 9 months ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Align proteins to genomes with splicing and frameshift☆397Jan 5, 2026Updated 3 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆292Feb 25, 2026Updated last month
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,536Mar 31, 2026Updated last week