daler / gffutilsLinks
GFF and GTF file manipulation and interconversion
☆309Updated last year
Alternatives and similar repositories for gffutils
Users that are interested in gffutils are comparing it to the libraries listed below
Sorting:
- GFF and GVF specification documents☆216Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆278Updated 3 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆274Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆283Updated 9 months ago
- Read trimming tool for Illumina NGS data.☆147Updated 10 years ago
- BEDOPS: high-performance genomic feature operations☆354Updated 6 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆214Updated last month
- Genome Assembly and Annotation Service code☆216Updated last year
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆226Updated 4 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆282Updated 2 weeks ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆443Updated 10 months ago
- Windowed Adaptive Trimming for fastq files using quality☆226Updated 8 years ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆385Updated 5 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- FASTA/FASTQ pre-processing programs☆191Updated 3 years ago
- TransDecoder source☆298Updated last month
- Bayesian haplotype-based mutation calling☆319Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆182Updated 2 weeks ago
- [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …☆195Updated last year
- Toolset for SV simulation, comparison and filtering☆399Updated last year
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 4 months ago
- An overview of all nanopack tools☆272Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆244Updated this week
- Genome annotation with AUGUSTUS☆321Updated 3 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 2 weeks ago