daler / gffutilsLinks
GFF and GTF file manipulation and interconversion
☆312Updated last year
Alternatives and similar repositories for gffutils
Users that are interested in gffutils are comparing it to the libraries listed below
Sorting:
- GFF and GVF specification documents☆219Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆254Updated 6 months ago
- Read trimming tool for Illumina NGS data.☆150Updated 10 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆450Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆282Updated 5 months ago
- BEDOPS: high-performance genomic feature operations☆357Updated 8 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated last month
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- TransDecoder source☆301Updated 3 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- Windowed Adaptive Trimming for fastq files using quality☆226Updated 8 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆279Updated 2 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated 11 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆218Updated last month
- An overview of all nanopack tools☆276Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆229Updated 6 months ago
- FASTA/FASTQ pre-processing programs☆195Updated 3 years ago
- PAired-eND Assembler for DNA sequences☆137Updated 5 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆199Updated this week
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- ☆299Updated last month
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆186Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆244Updated 4 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 2 weeks ago
- 3D de novo assembly (3D DNA) pipeline☆219Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆251Updated this week
- Bayesian haplotype-based mutation calling☆323Updated 2 weeks ago