deweylab / RSEMLinks
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
☆448Updated last year
Alternatives and similar repositories for RSEM
Users that are interested in RSEM are comparing it to the libraries listed below
Sorting:
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆429Updated this week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆521Updated 5 months ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆515Updated last month
- RNA-seq workflow using STAR and DESeq2☆344Updated last year
- parallel fastq-dump wrapper☆299Updated 2 years ago
- GTEx & TOPMed data production and analysis pipelines☆376Updated 2 months ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆394Updated last week
- Transcript assembly and quantification for RNA-Seq☆458Updated 3 weeks ago
- Differential analysis of RNA-Seq☆305Updated 2 months ago
- Application for making ENCODE Blacklists☆314Updated 4 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆415Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆266Updated 2 years ago
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆426Updated 7 months ago
- STAR-Fusion codebase☆244Updated last month
- Customizable workflows based on snakemake and python for the analysis of NGS data☆398Updated this week
- Tools to process and analyze deep sequencing data.☆730Updated 2 weeks ago
- Intro to ChIPseq using HPC☆309Updated 2 years ago
- ☆269Updated 8 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆753Updated 2 weeks ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆271Updated last year
- Strelka2 germline and somatic small variant caller☆375Updated 3 years ago
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆508Updated 8 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆256Updated 2 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆404Updated 2 weeks ago
- Near-optimal RNA-Seq quantification☆693Updated 4 months ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆478Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆278Updated last year