RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
☆477Aug 7, 2026Updated 3 weeks ago
Alternatives and similar repositories for RSEM
Users that are interested in RSEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq aligner☆2,243Mar 18, 2025Updated last year
- A short tutorial on how to use RSEM☆139Apr 19, 2020Updated 6 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆898Apr 23, 2026Updated 4 months ago
- Near-optimal RNA-Seq quantification☆769Jul 12, 2026Updated last month
- Transcript assembly and quantification for RNA-Seq☆529Aug 9, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆495Jul 7, 2026Updated last month
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆927Updated this week
- Cutadapt removes adapter sequences from sequencing reads☆586Jul 27, 2026Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆284Jul 7, 2026Updated last month
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,489Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆539Jul 31, 2026Updated last month
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,077Jul 31, 2026Updated last month
- BEDOPS: high-performance genomic feature operations☆375Apr 29, 2025Updated last year
- Consistent adapter and quality trimming for NGS, with extra functionality for RRBS data☆576Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MACS -- Model-based Analysis of ChIP-Seq☆784Jul 7, 2026Updated last month
- TransDecoder source☆310Mar 22, 2026Updated 5 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,423Updated this week
- bedtools - the swiss army knife for genome arithmetic☆1,046Jun 10, 2026Updated 2 months ago
- ☆324Mar 31, 2020Updated 6 years ago
- Understand your transcriptome assembly☆103Mar 22, 2024Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,244May 19, 2026Updated 3 months ago
- Toolkit for processing sequences in FASTA/Q formats☆1,558Jun 1, 2025Updated last year
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆1,766Aug 7, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆149Aug 3, 2026Updated 3 weeks ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆548Jun 18, 2026Updated 2 months ago
- Tools to process and analyze deep sequencing data.☆763Aug 19, 2026Updated 2 weeks ago
- SRA Tools☆1,364Aug 26, 2026Updated last week
- Tools (written in C using htslib) for manipulating next-generation sequencing data☆1,946Updated this week
- Strelka2 germline and somatic small variant caller☆394Apr 20, 2026Updated 4 months ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 4 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆307Nov 6, 2025Updated 9 months ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆139Dec 15, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,590Updated this week
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆462Aug 18, 2026Updated 2 weeks ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Apr 16, 2021Updated 5 years ago
- Differential analysis of RNA-Seq☆316May 28, 2025Updated last year
- ☆308Aug 10, 2026Updated 3 weeks ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆138Jan 28, 2026Updated 7 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆877Apr 20, 2026Updated 4 months ago