deweylab / RSEMLinks
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
☆454Updated last year
Alternatives and similar repositories for RSEM
Users that are interested in RSEM are comparing it to the libraries listed below
Sorting:
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆433Updated 2 months ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆524Updated last month
- GTEx & TOPMed data production and analysis pipelines☆384Updated 3 weeks ago
- Strelka2 germline and somatic small variant caller☆383Updated 3 years ago
- Tools for handling Unique Molecular Identifiers in NGS data sets☆523Updated 3 months ago
- parallel fastq-dump wrapper☆298Updated 2 years ago
- Transcript assembly and quantification for RNA-Seq☆464Updated this week
- Quick mining and visualization of NGS data by integrating genomic databases☆266Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆439Updated 9 months ago
- Tools to process and analyze deep sequencing data.☆737Updated 2 months ago
- Application for making ENCODE Blacklists☆323Updated 4 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆400Updated 2 months ago
- RNA-seq workflow using STAR and DESeq2☆346Updated last month
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆423Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆553Updated last year
- Differential analysis of RNA-Seq☆306Updated 4 months ago
- Count bases in BAM/CRAM files☆318Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆486Updated last month
- STAR-Fusion codebase☆245Updated last week
- ☆275Updated 10 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated 2 years ago
- Structural variant and indel caller for mapped sequencing data☆442Updated 2 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- MACS -- Model-based Analysis of ChIP-Seq☆756Updated 2 months ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆397Updated last week
- Near-optimal RNA-Seq quantification☆702Updated 6 months ago
- This Snakemake pipeline implements the GATK best-practices workflow☆259Updated 2 years ago
- Differential expression of RNA-seq data using the Negative Binomial☆416Updated last month
- This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.☆243Updated 2 years ago
- Intro to ChIPseq using HPC☆314Updated 2 years ago