gpertea / gffcompareLinks
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
☆241Updated 2 months ago
Alternatives and similar repositories for gffcompare
Users that are interested in gffcompare are comparing it to the libraries listed below
Sorting:
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated 2 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆237Updated last week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆275Updated 7 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Full-Length Alternative Isoform analysis of RNA☆234Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆246Updated 3 weeks ago
- Read trimming tool for Illumina NGS data.☆144Updated 10 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆217Updated 3 weeks ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆158Updated 2 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆258Updated 2 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆180Updated last week
- Match up paired end fastq files quickly and efficiently.☆151Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆187Updated 2 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated last month
- Genome Assembly and Annotation Service code☆214Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆272Updated this week
- A structural variation pipeline for short-read sequencing☆193Updated this week
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- Web application to explore the Sequence Read Archive.☆217Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆170Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆280Updated last year
- 3D de novo assembly (3D DNA) pipeline☆215Updated last year
- ☆151Updated 3 months ago
- ☆155Updated 2 years ago
- Structural variation and indel detection by local assembly☆246Updated this week
- An overview of all nanopack tools☆267Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆149Updated last year