gpertea / gffcompareLinks
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
☆255Updated 6 months ago
Alternatives and similar repositories for gffcompare
Users that are interested in gffcompare are comparing it to the libraries listed below
Sorting:
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆230Updated 6 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated 11 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆171Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated last week
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆199Updated 6 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 6 months ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆149Updated 10 years ago
- Full-Length Alternative Isoform analysis of RNA☆246Updated 3 weeks ago
- Nanopore demultiplexing, QC and alignment pipeline☆217Updated 2 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 3 weeks ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆200Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated last month
- Annotation and Ranking of Structural Variation☆285Updated 3 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆258Updated 4 months ago
- A structural variation pipeline for short-read sequencing☆201Updated this week
- An overview of all nanopack tools☆277Updated 2 years ago
- ☆149Updated last week
- A minimap2 frontend for PacBio native data formats☆210Updated this week
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- Pipeline to fetch metadata and raw FastQ files from public databases☆186Updated last week
- Structural variation and indel detection by local assembly☆250Updated 4 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆284Updated 5 months ago