Deep networks for protein functional inference
☆190Mar 11, 2026Updated 4 months ago
Alternatives and similar repositories for proteinfer
Users that are interested in proteinfer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆322Apr 6, 2025Updated last year
- Deep functional residue identification☆352Mar 24, 2023Updated 3 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆28May 29, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Neural Networks for Protein Sequence Alignment☆139Nov 11, 2024Updated last year
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆134Nov 19, 2025Updated 8 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 10 months ago
- "Rewriting protein alphabets with language models"☆24Jun 9, 2026Updated last month
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,317May 22, 2025Updated last year
- ☆259Jul 31, 2024Updated last year
- Compressing protein structures effectively with torsion angles☆194Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆217Sep 24, 2024Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆318Mar 6, 2026Updated 4 months ago
- Genomic language model predicts protein co-regulation and function☆91Mar 19, 2025Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,269Jul 1, 2026Updated 3 weeks ago
- ☆189Feb 8, 2022Updated 4 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆152Jun 10, 2026Updated last month
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- ☆51Dec 2, 2024Updated last year
- An all-atom protein structure dataset for machine learning.☆365Mar 16, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jul 3, 2026Updated 3 weeks ago
- MGnify genome analysis pipeline☆114Updated this week
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- ☆56May 5, 2025Updated last year
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,111Jul 16, 2026Updated last week
- ☆57Aug 28, 2024Updated last year
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Align proteins to genomes with splicing and frameshift☆410Jan 5, 2026Updated 6 months ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multiple Protein Structure Alignment at Scale with FoldMason☆282May 11, 2026Updated 2 months ago
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 7 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆564Dec 12, 2023Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆40Sep 22, 2025Updated 10 months ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- ☆17Nov 11, 2022Updated 3 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆280Feb 14, 2024Updated 2 years ago