Deep networks for protein functional inference
☆187Mar 11, 2026Updated last month
Alternatives and similar repositories for proteinfer
Users that are interested in proteinfer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆306Apr 6, 2025Updated last year
- Deep functional residue identification☆349Mar 24, 2023Updated 3 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 2 years ago
- Neural Networks for Protein Sequence Alignment☆136Nov 11, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 4 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 7 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,299May 22, 2025Updated 10 months ago
- ☆257Jul 31, 2024Updated last year
- Genomic language model predicts protein co-regulation and function☆87Mar 19, 2025Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆309Mar 6, 2026Updated last month
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated 2 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,215Mar 10, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆214Sep 24, 2024Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆138Updated this week
- ☆192Feb 8, 2022Updated 4 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆270Jan 31, 2026Updated 2 months ago
- An all-atom protein structure dataset for machine learning.☆363Mar 16, 2024Updated 2 years ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆232Updated this week
- ☆51Dec 2, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆58Aug 28, 2024Updated last year
- MMseqs2 app to run on your workstation or servers☆107Apr 6, 2026Updated last week
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,023Apr 4, 2026Updated last week
- ☆55May 5, 2025Updated 11 months ago
- MGnify genome analysis pipeline☆110Updated this week
- Align proteins to genomes with splicing and frameshift☆398Jan 5, 2026Updated 3 months ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆276Feb 14, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 4 months ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated last month
- Diffusion models of protein structure; trigonometry and attention are all you need!☆567Dec 12, 2023Updated 2 years ago
- Machine learning prediction of enzyme optimum pH☆25Apr 29, 2025Updated 11 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- Multiple sequence aligner for protein and DNA/RNA.☆26Jan 3, 2018Updated 8 years ago
- ☆211Apr 21, 2025Updated 11 months ago