Alternatives and similar repositories for ProtTrans:

Users that are interested in ProtTrans are comparing it to the libraries listed below

• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆683Updated 2 years ago
• nadavbra / protein_bert
  ☆523Updated last year
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆483Updated last year
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,210Updated 7 months ago
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,593Updated 10 months ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆673Updated this week
• Peldom / papers_for_protein_design_using_DL
  List of papers about Proteins Design using Deep Learning
  ☆1,609Updated last week
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆932Updated 2 weeks ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆700Updated last week
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆540Updated last year
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆643Updated 9 months ago
• sokrypton / ColabFold
  Making Protein folding accessible to all!
  ☆2,169Updated last week
• a-r-j / graphein
  Protein Graph Library
  ☆1,079Updated 3 weeks ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆552Updated 7 months ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆347Updated 2 years ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆566Updated 4 months ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,204Updated 6 months ago
• salesforce / progen
  Official release of the ProGen models
  ☆641Updated last year
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆500Updated last month
• kalininalab / alphafold_non_docker
  AlphaFold2 non-docker setup
  ☆353Updated last year
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆354Updated 9 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆702Updated 7 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆294Updated 6 months ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆290Updated 2 weeks ago
• MAGICS-LAB / DNABERT_2
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
  ☆353Updated 3 months ago
• jerryji1993 / DNABERT
  DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
  ☆642Updated last year
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆253Updated 4 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆476Updated 3 weeks ago
• kexinhuang12345 / DeepPurpose
  A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
  ☆1,026Updated 9 months ago
• facebookresearch / esm
  Evolutionary Scale Modeling (esm): Pretrained language models for proteins
  ☆3,538Updated last year