agemagician / ProtTransLinks
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
☆1,257Updated 4 months ago
Alternatives and similar repositories for ProtTrans
Users that are interested in ProtTrans are comparing it to the libraries listed below
Sorting:
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆719Updated 2 years ago
- ☆553Updated 6 months ago
- Listing of papers about machine learning for proteins.☆1,670Updated last year
- Get protein embeddings from protein sequences☆498Updated 2 years ago
- Code for the ProteinMPNN paper☆1,461Updated last year
- List of papers about Proteins Design using Deep Learning☆1,787Updated last week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,074Updated last month
- Making Protein Design accessible to all via Google Colab!☆818Updated this week
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆701Updated 2 months ago
- ColabFold on your local PC☆767Updated 3 months ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,332Updated 5 months ago
- Making Protein folding accessible to all!☆2,446Updated 2 weeks ago
- Protein Graph Library☆1,134Updated 2 weeks ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆617Updated last year
- User friendly and accurate binder design pipeline☆814Updated last month
- Remote protein homology detection suite.☆591Updated last month
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆689Updated last year
- UniRep model, usage, and examples.☆355Updated 3 years ago
- A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)☆1,086Updated last year
- Official release of the ProGen models☆673Updated 2 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆554Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆3,817Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆507Updated last month
- OmegaFold Release Code☆598Updated 2 years ago
- ☆755Updated 4 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,834Updated last week
- Official repository for the ProteinGym benchmarks☆352Updated 2 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆376Updated 2 years ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆641Updated 4 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆308Updated 4 months ago