ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
☆1,293May 22, 2025Updated 9 months ago
Alternatives and similar repositories for ProtTrans
Users that are interested in ProtTrans are comparing it to the libraries listed below
Sorting:
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆3,990Feb 7, 2024Updated 2 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆733Dec 11, 2022Updated 3 years ago
- Get protein embeddings from protein sequences☆507Apr 28, 2023Updated 2 years ago
- ☆569Apr 3, 2025Updated 11 months ago
- Listing of papers about machine learning for proteins.☆1,689May 31, 2024Updated last year
- Code for the ProteinMPNN paper☆1,645Aug 14, 2024Updated last year
- List of papers about Proteins Design using Deep Learning☆1,895Updated this week
- UniRep model, usage, and examples.☆360Mar 1, 2026Updated last week
- Bilingual Language Model for Protein Sequence and Structure☆302Mar 6, 2026Updated last week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,181Updated this week
- Making Protein folding accessible to all!☆2,656Updated this week
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆569Nov 19, 2025Updated 3 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,992Updated this week
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,289Dec 16, 2025Updated 2 months ago
- Official release of the ProGen models☆691Aug 4, 2023Updated 2 years ago
- Ankh: Optimized Protein Language Model☆243Jun 16, 2025Updated 8 months ago
- Deep functional residue identification☆348Mar 24, 2023Updated 2 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆734Jun 19, 2024Updated last year
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305May 1, 2025Updated 10 months ago
- OmegaFold Release Code☆613Dec 12, 2022Updated 3 years ago
- Making Protein Design accessible to all via Google Colab!☆890Updated this week
- ☆2,262Jan 26, 2026Updated last month
- Official repository for the ProteinGym benchmarks☆394Jan 12, 2026Updated 2 months ago
- ☆255Jul 31, 2024Updated last year
- Remote protein homology detection suite.☆615Aug 12, 2025Updated 7 months ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆317Jun 13, 2025Updated 9 months ago
- Code for running RFdiffusion☆2,773Nov 20, 2025Updated 3 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆564Dec 12, 2023Updated 2 years ago
- Protein Graph Library☆1,163Mar 2, 2026Updated last week
- An all-atom protein structure dataset for machine learning.☆360Mar 16, 2024Updated last year
- ColabFold on your local PC☆832Updated this week
- Generative Models for Graph-Based Protein Design☆284Dec 24, 2020Updated 5 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆355Jun 29, 2023Updated 2 years ago
- A collection of *fold* tools☆302Aug 8, 2025Updated 7 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆664Jan 15, 2026Updated last month
- This package contains deep learning models and related scripts for RoseTTAFold☆2,232Feb 15, 2024Updated 2 years ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆408Sep 3, 2023Updated 2 years ago
- Standardized data set for machine learning of protein structure☆910Nov 18, 2020Updated 5 years ago