agemagician / ProtTransLinks
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
☆1,265Updated 5 months ago
Alternatives and similar repositories for ProtTrans
Users that are interested in ProtTrans are comparing it to the libraries listed below
Sorting:
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆719Updated 2 years ago
- ☆558Updated 6 months ago
- Listing of papers about machine learning for proteins.☆1,674Updated last year
- Get protein embeddings from protein sequences☆502Updated 2 years ago
- Code for the ProteinMPNN paper☆1,497Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,083Updated last week
- List of papers about Proteins Design using Deep Learning☆1,810Updated this week
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,352Updated 6 months ago
- Making Protein Design accessible to all via Google Colab!☆832Updated last week
- ColabFold on your local PC☆770Updated 4 months ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆707Updated 3 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆3,850Updated last year
- Remote protein homology detection suite.☆598Updated 2 months ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆695Updated last year
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆624Updated last year
- Making Protein folding accessible to all!☆2,485Updated last week
- Official release of the ProGen models☆676Updated 2 years ago
- Protein Graph Library☆1,138Updated 2 weeks ago
- User friendly and accurate binder design pipeline☆878Updated 2 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆556Updated last year
- UniRep model, usage, and examples.☆357Updated 3 years ago
- ☆758Updated 5 months ago
- OmegaFold Release Code☆601Updated 2 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆532Updated this week
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆383Updated 2 years ago
- A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)☆1,091Updated last year
- Official repository for the ProteinGym benchmarks☆358Updated 3 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆366Updated last year
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,862Updated last week
- Nature Methods: RNA foundation model (together with RhoFold)☆314Updated 5 months ago