Alternatives and similar repositories for ProtTrans:

Users that are interested in ProtTrans are comparing it to the libraries listed below

• nadavbra / protein_bert
  ☆512Updated last year
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆675Updated 2 years ago
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,123Updated 5 months ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆473Updated last year
• Peldom / papers_for_protein_design_using_DL
  List of papers about Proteins Design using Deep Learning
  ☆1,522Updated this week
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,561Updated 7 months ago
• jerryji1993 / DNABERT
  DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
  ☆617Updated 10 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆663Updated last month
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆866Updated this week
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆635Updated 2 months ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆609Updated 6 months ago
• a-r-j / graphein
  Protein Graph Library
  ☆1,055Updated 2 months ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆344Updated 2 years ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,148Updated 4 months ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆529Updated last year
• facebookresearch / esm
  Evolutionary Scale Modeling (esm): Pretrained language models for proteins
  ☆3,379Updated 11 months ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆554Updated 2 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆340Updated last year
• MAGICS-LAB / DNABERT_2
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
  ☆313Updated last month
• baker-laboratory / RoseTTAFold-All-Atom
  ☆678Updated 5 months ago
• salesforce / progen
  Official release of the ProGen models
  ☆629Updated last year
• sokrypton / ColabFold
  Making Protein folding accessible to all!
  ☆2,057Updated 2 weeks ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆516Updated 5 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆339Updated 7 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆412Updated 2 weeks ago
• microsoft / protein-sequence-models
  ☆233Updated 5 months ago
• kalininalab / alphafold_non_docker
  AlphaFold2 non-docker setup
  ☆350Updated last year
• soedinglab / MMseqs2
  MMseqs2: ultra fast and sensitive search and clustering suite
  ☆1,515Updated this week
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆313Updated last year
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆383Updated 2 weeks ago