Versatile computational pipeline for processing protein structure data for deep learning applications.
☆275Feb 14, 2024Updated 2 years ago
Alternatives and similar repositories for ProteinFlow
Users that are interested in ProteinFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆268Apr 27, 2025Updated 11 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Making Protein Design accessible to all via Google Colab!☆901Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Implementation for SE(3) diffusion model with application to protein backbone generation☆418Jul 3, 2023Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 4 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- Official repository for the ProteinGym benchmarks☆407Mar 25, 2026Updated 2 weeks ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last month
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆520Mar 22, 2026Updated 2 weeks ago
- Code for the ProteinMPNN paper☆1,685Aug 14, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- List of papers about Proteins Design using Deep Learning☆1,914Updated this week
- A collection of *fold* tools☆304Aug 8, 2025Updated 8 months ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated 3 weeks ago
- A generative model for programmable protein design☆809Apr 11, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆308Mar 6, 2026Updated last month
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 11 months ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆211Apr 21, 2025Updated 11 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆238Mar 26, 2026Updated 2 weeks ago
- ☆136Aug 8, 2024Updated last year
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- Open source implementation of AlphaFold3☆1,053Oct 7, 2024Updated last year
- ☆118Dec 7, 2022Updated 3 years ago
- OmegaFold Release Code☆617Dec 12, 2022Updated 3 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 4 months ago
- Protein Graph Library☆1,169Mar 20, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆62Apr 9, 2024Updated 2 years ago
- ☆214Sep 24, 2024Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆666Jan 15, 2026Updated 2 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆281Dec 10, 2024Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Jan 16, 2026Updated 2 months ago
- Fast protein backbone generation with SE(3) flow matching.☆322Jul 19, 2024Updated last year
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated 2 months ago