soedinglab / MMseqs2-AppLinks
MMseqs2 app to run on your workstation or servers
☆104Updated last week
Alternatives and similar repositories for MMseqs2-App
Users that are interested in MMseqs2-App are comparing it to the libraries listed below
Sorting:
- Multiple Protein Structure Alignment at Scale with FoldMason☆225Updated last week
- Fast protein structure searching or your money back☆118Updated 3 weeks ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Updated 4 months ago
- Evolutionary velocity with protein language models☆95Updated last month
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆79Updated 5 months ago
- Transmembrane proteins predicted through Language Model embeddings☆44Updated 6 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆121Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆102Updated last year
- snakemake pipeline for creating trees from sequence sets☆97Updated this week
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- ColabFold protocol☆56Updated last year
- Inference of couplings in proteins and RNAs from sequence variation☆116Updated 3 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆113Updated 5 months ago
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆173Updated 9 months ago
- Install alphafold on the local machine, get out of docker.☆103Updated 4 years ago
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated last month
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆110Updated last week
- ☆47Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆80Updated this week
- Feature map and function annotation of Proteins☆34Updated last year
- A domain parser for Alphafold models☆46Updated 2 years ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated 2 years ago
- PSIPRED Protein Secondary Structure Predictor☆58Updated 7 months ago
- ☆79Updated last year