Alternatives and similar repositories for MMseqs2-App

Users that are interested in MMseqs2-App are comparing it to the libraries listed below

• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆186Updated this week
• greener-group / progres
  Fast protein structure searching or your money back
  ☆111Updated 5 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆119Updated last year
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 3 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated last week
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆102Updated last week
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆71Updated 3 weeks ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆38Updated last month
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆151Updated 9 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆113Updated 2 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆58Updated 5 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆69Updated 8 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆86Updated last week
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆47Updated 6 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆125Updated 10 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 10 months ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆76Updated last week
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 2 months ago
• mattarnoldbio / alphapickle
  ☆33Updated last year
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated last year
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆105Updated 4 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 9 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆58Updated 2 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆73Updated last month
• chayan7 / flashfold
  A tool for protein and protein complex structure prediction.
  ☆29Updated 3 months ago
• akiyamalab / MEGADOCK
  An ultra-high-performance protein-protein docking for heterogeneous supercomputers
  ☆63Updated last year