MMseqs2 app to run on your workstation or servers
☆110Apr 23, 2026Updated last week
Alternatives and similar repositories for MMseqs2-App
Users that are interested in MMseqs2-App are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein representation and design under a single training scheme☆24Updated this week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,226Mar 10, 2026Updated last month
- Multiple Protein Structure Alignment at Scale with FoldMason☆271Jan 31, 2026Updated 3 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆246Mar 26, 2026Updated last month
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Dec 2, 2024Updated last year
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,033Apr 16, 2026Updated 2 weeks ago
- Fast indexing and search of discontinuous motifs in protein structures☆138Apr 23, 2026Updated last week
- Discovery of conserved gene clusters in multiple genomes☆130Jan 16, 2026Updated 3 months ago
- sensitive and precise assembly of short sequencing reads☆166Oct 11, 2024Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ColabFold on your local PC☆850Apr 21, 2026Updated last week
- ☆37Apr 9, 2026Updated 3 weeks ago
- code and source data for de novo design of Kemp elimination paper☆25Sep 18, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated 2 months ago
- ☆17Aug 10, 2020Updated 5 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆47May 8, 2024Updated last year
- ☆132Mar 10, 2026Updated last month
- UFCG: Universal Fungal Core Genes☆36Jul 29, 2025Updated 9 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆87Mar 12, 2026Updated last month
- Scripts to benchmark and train foldseek☆41May 22, 2024Updated last year
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Remote protein homology detection suite.☆617Aug 12, 2025Updated 8 months ago
- Making Protein folding accessible to all!☆2,737Mar 17, 2026Updated last month
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆30Aug 9, 2024Updated last year
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 2 months ago
- Extension of ThermoMPNN for double mutant predictions☆60Mar 23, 2026Updated last month
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆909Apr 6, 2026Updated 3 weeks ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆84Apr 21, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Neural Networks for Protein Sequence Alignment☆136Nov 11, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 3 months ago
- ☆38Oct 16, 2024Updated last year
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- Bilingual Language Model for Protein Sequence and Structure☆309Mar 6, 2026Updated last month
- Code for ColabDock paper☆154May 1, 2025Updated 11 months ago