Alternatives and similar repositories for MMseqs2-App

Users that are interested in MMseqs2-App are comparing it to the libraries listed below

• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆196Updated last month
• greener-group / progres
  Fast protein structure searching or your money back
  ☆114Updated last month
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆75Updated 2 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆165Updated 6 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆41Updated 3 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆105Updated 2 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 7 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated 3 weeks ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆74Updated 2 months ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆113Updated 2 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆56Updated 11 months ago
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆104Updated 4 years ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆108Updated last month
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆95Updated this week
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆131Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆96Updated 9 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆160Updated 11 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆57Updated last year
• mattarnoldbio / alphapickle
  ☆33Updated last year
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆87Updated 3 weeks ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 4 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆48Updated 6 years ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆23Updated 2 years ago
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆179Updated last week
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆52Updated 3 years ago
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆62Updated last year