CLEAN: a contrastive learning model for high-quality functional prediction of proteins
☆315Apr 6, 2025Updated last year
Alternatives and similar repositories for CLEAN
Users that are interested in CLEAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆53Aug 13, 2025Updated 10 months ago
- Bilingual Language Model for Protein Sequence and Structure☆316Mar 6, 2026Updated 4 months ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- ☆103Dec 30, 2025Updated 6 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,255May 13, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reaction-Conditioned Virtual Screening of Enzymes☆45Jun 13, 2026Updated 3 weeks ago
- ☆79Oct 27, 2021Updated 4 years ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆54Nov 4, 2025Updated 8 months ago
- Machine learning prediction of enzyme optimum pH☆55Apr 29, 2025Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆610Mar 8, 2026Updated 3 months ago
- ☆80Sep 12, 2024Updated last year
- Deep networks for protein functional inference☆189Mar 11, 2026Updated 3 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆94Apr 10, 2026Updated 2 months ago
- DeepECtransformer☆31Oct 20, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 4 months ago
- Deep functional residue identification☆352Mar 24, 2023Updated 3 years ago
- ☆596Feb 6, 2025Updated last year
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆71Aug 13, 2025Updated 10 months ago
- Ankh: Optimized Protein Language Model☆248Jun 16, 2025Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆258Mar 26, 2026Updated 3 months ago
- Official repository for the ProteinGym benchmarks☆445Mar 25, 2026Updated 3 months ago
- ☆259Jul 31, 2024Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Machine learning prediction of enzyme optimum pH☆25Apr 29, 2025Updated last year
- Diffusion models of protein structure; trigonometry and attention are all you need!☆566Dec 12, 2023Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆274Apr 27, 2025Updated last year
- Official release of the ProGen models☆704Jun 2, 2026Updated last month
- The Family of Diffusion Protein Language Models (DPLM)☆338Jul 25, 2025Updated 11 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆84May 25, 2026Updated last month
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,140Feb 7, 2024Updated 2 years ago
- Public RFDiffusionAA repo☆483Jul 9, 2024Updated last year
- ☆212Apr 21, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆188Apr 21, 2024Updated 2 years ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,100Updated this week
- A generative model for programmable protein design☆822Apr 11, 2024Updated 2 years ago
- ☆2,800Jun 16, 2026Updated 2 weeks ago
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 3 months ago
- ☆118Jan 3, 2026Updated 6 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago