CLEAN: a contrastive learning model for high-quality functional prediction of proteins
☆330Apr 6, 2025Updated last year
Alternatives and similar repositories for CLEAN
Users that are interested in CLEAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆55Aug 13, 2025Updated last year
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- Bilingual Language Model for Protein Sequence and Structure☆325Mar 6, 2026Updated 7 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,308Sep 9, 2026Updated last month
- Reaction-Conditioned Virtual Screening of Enzymes☆50Jun 13, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆85Oct 27, 2021Updated 4 years ago
- Machine learning prediction of enzyme optimum pH☆57Apr 29, 2025Updated last year
- Deep networks for protein functional inference☆196Mar 11, 2026Updated 7 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆638Mar 8, 2026Updated 7 months ago
- ☆108Dec 30, 2025Updated 9 months ago
- DeepECtransformer☆33Oct 20, 2023Updated 2 years ago
- ☆83Sep 12, 2024Updated 2 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Sep 29, 2026Updated 2 weeks ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆61Jul 30, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆48Jun 17, 2025Updated last year
- A generalized enzyme kinetics parameter prediction model.☆98Oct 2, 2025Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 7 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆276Sep 9, 2026Updated last month
- Deep functional residue identification☆355Mar 24, 2023Updated 3 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆72Aug 13, 2025Updated last year
- Official repository for the ProteinGym benchmarks☆476Mar 25, 2026Updated 6 months ago
- Ankh: Optimized Protein Language Model☆250Jun 16, 2025Updated last year
- ☆261Jul 31, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- Diffusion models of protein structure; trigonometry and attention are all you need!☆568Sep 9, 2026Updated last month
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆64Sep 14, 2026Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Apr 27, 2025Updated last year
- Official release of the ProGen models☆706Jun 2, 2026Updated 4 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆141Apr 23, 2026Updated 5 months ago
- ☆644Feb 6, 2025Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,170Feb 7, 2024Updated 2 years ago
- Public RFDiffusionAA repo☆490Jul 9, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆214Apr 21, 2025Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆190Apr 21, 2024Updated 2 years ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,152Sep 30, 2026Updated 2 weeks ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆268Nov 5, 2025Updated 11 months ago
- A generative model for programmable protein design☆834Updated this week
- Compressing protein structures effectively with torsion angles☆197Sep 7, 2026Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆425Jul 3, 2023Updated 3 years ago