Foldseek enables fast and sensitive comparisons of large structure sets.
☆1,248May 13, 2026Updated last month
Alternatives and similar repositories for foldseek
Users that are interested in foldseek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,078Updated this week
- Making Protein folding accessible to all!☆2,787Apr 29, 2026Updated last month
- Bilingual Language Model for Protein Sequence and Structure☆310Mar 6, 2026Updated 3 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆604Mar 8, 2026Updated 3 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,114Feb 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multiple Protein Structure Alignment at Scale with FoldMason☆278May 11, 2026Updated last month
- Code for the ProteinMPNN paper☆1,751Aug 14, 2024Updated last year
- Compressing protein structures effectively with torsion angles☆194Feb 10, 2026Updated 4 months ago
- Making Protein Design accessible to all via Google Colab!☆915Apr 6, 2026Updated 2 months ago
- ☆810May 18, 2026Updated 3 weeks ago
- ☆2,723Updated this week
- ColabFold on your local PC☆860Apr 21, 2026Updated last month
- Code for running RFdiffusion☆2,906Apr 24, 2026Updated last month
- Official repository for the ProteinGym benchmarks☆433Mar 25, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- List of papers about Proteins Design using Deep Learning☆1,931May 30, 2026Updated 2 weeks ago
- Remote protein homology detection suite.☆622Aug 12, 2025Updated 10 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,934May 6, 2026Updated last month
- OmegaFold Release Code☆623Dec 12, 2022Updated 3 years ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,375Dec 16, 2025Updated 5 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated 2 years ago
- ☆581Feb 6, 2025Updated last year
- ☆212Apr 21, 2025Updated last year
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆400Feb 26, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A generative model for programmable protein design☆820Apr 11, 2024Updated 2 years ago
- ☆312Jun 5, 2026Updated last week
- User friendly and accurate binder design pipeline☆1,123May 11, 2026Updated last month
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- Protein hallucination and inpainting with RoseTTAFold☆282Mar 30, 2023Updated 3 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆180Jun 3, 2026Updated last week
- Diffusion models of protein structure; trigonometry and attention are all you need!☆568Dec 12, 2023Updated 2 years ago
- Public RFDiffusionAA repo☆482Jul 9, 2024Updated last year
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,310May 22, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation for SE(3) diffusion model with application to protein backbone generation☆421Jul 3, 2023Updated 2 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆119Jun 3, 2026Updated last week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆255Mar 26, 2026Updated 2 months ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆314Apr 6, 2025Updated last year
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,520May 2, 2025Updated last year
- Official repository for the Boltz biomolecular interaction models☆4,021May 29, 2026Updated 2 weeks ago
- Listing of papers about machine learning for proteins.☆1,707May 31, 2024Updated 2 years ago