Alternatives and similar repositories for hh-suite

Users that are interested in hh-suite are comparing it to the libraries listed below

• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆1,095Updated last week
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆779Updated 4 months ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆358Updated 3 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆289Updated 3 weeks ago
• kalininalab / alphafold_non_docker
  AlphaFold2 non-docker setup
  ☆368Updated last year
• soedinglab / MMseqs2
  MMseqs2: ultra fast and sensitive search and clustering suite
  ☆1,881Updated last week
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆626Updated last year
• KosinskiLab / AlphaPulldown
  ☆298Updated this week
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆503Updated 2 years ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆905Updated 3 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆366Updated last year
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆838Updated 3 weeks ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆337Updated 2 years ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆276Updated 10 months ago
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆170Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆389Updated 2 years ago
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆387Updated last month
• biolists / folding_tools
  A collection of *fold* tools
  ☆300Updated 3 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆765Updated 5 months ago
• biotite-dev / biotite
  A comprehensive library for computational molecular biology
  ☆886Updated this week
• nadavbra / protein_bert
  ☆559Updated 7 months ago
• ViennaRNA / ViennaRNA
  The ViennaRNA Package
  ☆370Updated 3 months ago
• tttianhao / CLEAN
  CLEAN: a contrastive learning model for high-quality functional prediction of proteins
  ☆290Updated 7 months ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆246Updated last year
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆242Updated 3 years ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆702Updated last year
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆721Updated 2 years ago
• microsoft / protein-sequence-models
  ☆253Updated last year
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,268Updated 5 months ago
• weizhongli / cdhit
  Automatically exported from code.google.com/p/cdhit
  ☆707Updated 3 years ago