soedinglab / hh-suite
Remote protein homology detection suite.
☆544Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for hh-suite
- Foldseek enables fast and sensitive comparisons of large structure sets.☆838Updated this week
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,459Updated this week
- ColabFold on your local PC☆611Updated 3 weeks ago
- AlphaFold2 non-docker setup☆344Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆333Updated 5 months ago
- HMMER: biological sequence analysis using profile HMMs☆320Updated last month
- Making Protein Design accessible to all via Google Colab!☆629Updated this week
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆147Updated 9 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆242Updated last week
- UniRep model, usage, and examples.☆340Updated 2 years ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆328Updated last year
- A comprehensive library for computational molecular biology☆683Updated last week
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆493Updated 3 months ago
- AutoDock Vina☆618Updated 2 weeks ago
- ☆218Updated this week
- Automatically exported from code.google.com/p/cdhit☆643Updated 2 years ago
- The ViennaRNA Package☆303Updated last month
- Get protein embeddings from protein sequences☆468Updated last year
- User friendly and accurate binder design pipeline☆302Updated this week
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆595Updated 5 months ago
- ☆649Updated 3 months ago
- A collection of *fold* tools☆290Updated 2 months ago
- Code for the ProteinMPNN paper☆1,046Updated 3 months ago
- Public RFDiffusionAA repo☆321Updated 4 months ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆228Updated 3 months ago
- Deep functional residue identification☆304Updated last year
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆664Updated last year
- Protein hallucination and inpainting with RoseTTAFold☆246Updated last year
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆278Updated 3 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,129Updated 9 months ago