sacdallago / bio_embeddings

Related projects ⓘ

Alternatives and complementary repositories for bio_embeddings

• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆664Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆328Updated last year
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆304Updated last year
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆340Updated 2 years ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆241Updated 3 weeks ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆290Updated 2 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆246Updated last year
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆625Updated this week
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆242Updated 9 months ago
• tbepler / protein-sequence-embedding-iclr2019
  Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
  ☆259Updated 3 years ago
• nadavbra / protein_bert
  ☆495Updated 11 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆333Updated 5 months ago
• microsoft / protein-sequence-models
  ☆228Updated 3 months ago
• Biomatter-Designs / ProteinGAN
  ☆193Updated 2 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆118Updated 4 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆242Updated last week
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆339Updated 8 months ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆595Updated 5 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆177Updated last year
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆97Updated 3 years ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆492Updated 3 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆300Updated 2 weeks ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆210Updated 2 years ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆162Updated 3 months ago
• lucidrains / protein-bert-pytorch
  Implementation of ProteinBERT in Pytorch
  ☆153Updated 3 years ago
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆834Updated this week
• gjoni / trDesign
  trRosetta for protein design
  ☆172Updated 3 years ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆206Updated 3 years ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆267Updated 3 weeks ago
• salesforce / provis
  Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
  ☆303Updated last year