sacdallago / bio_embeddingsLinks
Get protein embeddings from protein sequences
☆503Updated 2 years ago
Alternatives and similar repositories for bio_embeddings
Users that are interested in bio_embeddings are comparing it to the libraries listed below
Sorting:
- ☆559Updated 7 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆721Updated 2 years ago
- UniRep model, usage, and examples.☆358Updated 3 years ago
- Deep functional residue identification☆337Updated 2 years ago
- A collection of *fold* tools☆300Updated 3 months ago
- ☆253Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆121Updated 5 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,268Updated 5 months ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Updated 4 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆702Updated last year
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆389Updated 2 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆366Updated last year
- Remote protein homology detection suite.☆598Updated 3 months ago
- Protein hallucination and inpainting with RoseTTAFold☆272Updated 2 years ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆303Updated 6 months ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆626Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆267Updated last year
- A generative latent variable model for biological sequence families.☆242Updated 3 years ago
- ☆190Updated 3 years ago
- Making Protein Design accessible to all via Google Colab!☆838Updated 3 weeks ago
- Official repository for the ProteinGym benchmarks☆362Updated 3 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆289Updated 3 weeks ago
- Efficient evolution from protein language models☆217Updated 2 years ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆527Updated 9 months ago
- An all-atom protein structure dataset for machine learning.☆356Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆276Updated 10 months ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆208Updated 6 months ago
- Implementation of ProteinBERT in Pytorch☆162Updated 4 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- Antibody Numbering and Antigen Receptor ClassIfication☆246Updated last year