Alternatives and similar repositories for bio_embeddings:

Users that are interested in bio_embeddings are comparing it to the libraries listed below

• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆676Updated 2 years ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆346Updated 2 years ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆339Updated last year
• microsoft / protein-sequence-models
  ☆234Updated 5 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆293Updated 4 months ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆314Updated last year
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆250Updated last year
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago
• nadavbra / protein_bert
  ☆517Updated last year
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆251Updated last month
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆665Updated last month
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆263Updated 2 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆342Updated 7 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆425Updated 3 weeks ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆186Updated last year
• tbepler / protein-sequence-embedding-iclr2019
  Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
  ☆259Updated 3 years ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆249Updated 11 months ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆616Updated 7 months ago
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,168Updated last week
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆99Updated 3 years ago
• lucidrains / protein-bert-pytorch
  Implementation of ProteinBERT in Pytorch
  ☆155Updated 3 years ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆212Updated 3 weeks ago
• Biomatter-Designs / ProteinGAN
  ☆193Updated 2 years ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆524Updated 5 months ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆533Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆297Updated 3 months ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆487Updated last year
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆166Updated 4 months ago
• salesforce / provis
  Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
  ☆304Updated last year
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆212Updated 2 years ago