sacdallago / bio_embeddingsLinks
Get protein embeddings from protein sequences
☆495Updated 2 years ago
Alternatives and similar repositories for bio_embeddings
Users that are interested in bio_embeddings are comparing it to the libraries listed below
Sorting:
- ☆544Updated 4 months ago
- UniRep model, usage, and examples.☆355Updated 3 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆715Updated 2 years ago
- Deep functional residue identification☆329Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- A collection of *fold* tools☆297Updated 2 weeks ago
- ☆252Updated last year
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆679Updated last year
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆371Updated last year
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,243Updated 3 months ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆261Updated 4 years ago
- Efficient evolution from protein language models☆212Updated 2 years ago
- ☆192Updated 3 years ago
- Remote protein homology detection suite.☆586Updated 2 weeks ago
- Official repository for the ProteinGym benchmarks☆340Updated last month
- Evolutionary couplings from protein and RNA sequence alignments☆275Updated 5 months ago
- Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design☆600Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆365Updated last year
- A generative latent variable model for biological sequence families.☆233Updated 3 years ago
- Making Protein Design accessible to all via Google Colab!☆778Updated this week
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆301Updated 3 months ago
- Bilingual Language Model for Protein Sequence and Structure☆266Updated 7 months ago
- Protein hallucination and inpainting with RoseTTAFold☆265Updated 2 years ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆513Updated 6 months ago
- User friendly and accurate binder design pipeline☆640Updated 2 weeks ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆199Updated 3 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,042Updated this week
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆154Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆263Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆294Updated 3 months ago