agemagician / Ankh
Ankh: Optimized Protein Language Model
☆218Updated last year
Alternatives and similar repositories for Ankh:
Users that are interested in Ankh are comparing it to the libraries listed below
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆249Updated 11 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆143Updated last year
- ☆234Updated 5 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆104Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆219Updated 9 months ago
- Efficient evolution from protein language models☆186Updated last year
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆148Updated last year
- Official repository for the ProteinGym benchmarks☆263Updated 2 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆164Updated 5 months ago
- Get protein embeddings from protein sequences☆474Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆297Updated 3 months ago
- Diffusion-based all-atom protein generative model.☆177Updated last month
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆110Updated 3 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆298Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆96Updated 4 months ago
- ☆268Updated 7 months ago
- A collection of *fold* tools☆293Updated 4 months ago
- Bilingual Language Model for Protein Sequence and Structure☆212Updated 3 weeks ago
- Predict the structure of immune receptor proteins☆124Updated this week
- Protein hallucination and inpainting with RoseTTAFold☆250Updated last year
- Protein Ligand INteraction Dataset and Evaluation Resource☆197Updated 3 weeks ago
- Attempt at reproduction of AlphaFold2☆91Updated 3 months ago
- Sandbox for Deep-Learning based Computational Protein Design☆108Updated 2 weeks ago
- List of computational protein design research labs☆152Updated 2 months ago
- Protein-ligand structure prediction☆208Updated 6 months ago
- ☆119Updated last year
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆339Updated last year
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆110Updated last year
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆278Updated 9 months ago