Ankh: Optimized Protein Language Model
☆243Jun 16, 2025Updated 9 months ago
Alternatives and similar repositories for Ankh
Users that are interested in Ankh are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bilingual Language Model for Protein Sequence and Structure☆306Mar 6, 2026Updated 3 weeks ago
- ☆256Jul 31, 2024Updated last year
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,293May 22, 2025Updated 10 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 11 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 11 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,009Feb 7, 2024Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆405Updated this week
- OmegaFold Release Code☆615Dec 12, 2022Updated 3 years ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆129Nov 19, 2025Updated 4 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆99Jan 24, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆376Feb 26, 2026Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 7 months ago
- Compressing protein structures effectively with torsion angles☆191Feb 10, 2026Updated last month
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆306Apr 6, 2025Updated 11 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,196Mar 10, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆317Jun 13, 2025Updated 9 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆117Mar 3, 2026Updated 3 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆151Apr 16, 2025Updated 11 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- A list of manuscripts/tools using diffusion on biological enttieis☆99Oct 5, 2023Updated 2 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆580Mar 8, 2026Updated 3 weeks ago
- ☆123Feb 20, 2026Updated last month
- Making Protein Design accessible to all via Google Colab!☆895Mar 10, 2026Updated 2 weeks ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆330Oct 28, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆165Aug 24, 2023Updated 2 years ago
- ☆571Apr 3, 2025Updated 11 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆734Dec 11, 2022Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆36Sep 2, 2025Updated 6 months ago
- ☆211Apr 21, 2025Updated 11 months ago
- Awesome Protein Representation Learning☆685Nov 16, 2024Updated last year
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year