Fast protein domain structure embedding+search tool
☆27Sep 21, 2025Updated 6 months ago
Alternatives and similar repositories for merizo_search
Users that are interested in merizo_search are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 10 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 10 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆127Feb 24, 2026Updated last month
- Detection of remote homology by comparison of protein language model representations☆61Dec 16, 2024Updated last year
- ☆24Nov 14, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Protein structure alignment and search algorithm☆80Updated this week
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆79Aug 22, 2025Updated 7 months ago
- ☆49Sep 25, 2024Updated last year
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆17Jan 14, 2025Updated last year
- Home of the public Martini 3 lipid parameters☆22Sep 29, 2025Updated 6 months ago
- Natural Language-Based Synthetic Data Generation for Cluster Analysis.☆18Feb 23, 2025Updated last year
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 11 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆86Mar 12, 2026Updated 2 weeks ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆43Jun 17, 2025Updated 9 months ago
- Sandbox for Deep-Learning based Computational Protein Design☆119Dec 11, 2025Updated 3 months ago
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆14Jun 22, 2022Updated 3 years ago
- Code for the paper "Learning to engineer protein flexibility".☆23Updated this week
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.☆38Mar 18, 2026Updated last week
- Species-aware DNA language modeling☆18Jan 25, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- NEFF Calculator and MSA File Converter☆13Sep 16, 2025Updated 6 months ago
- A benchmark for 3D biomolecular structure prediction models☆69May 11, 2025Updated 10 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆18Jun 9, 2022Updated 3 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆266Jan 31, 2026Updated last month
- Visualization and management of denovo transcriptomes☆10Feb 26, 2021Updated 5 years ago
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆14Mar 14, 2023Updated 3 years ago
- DyNoPy☆11Sep 5, 2024Updated last year
- For when you just need a coverage plot.☆11Mar 26, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆62Updated this week
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆122May 27, 2025Updated 10 months ago
- The bioplib library☆12Jul 25, 2023Updated 2 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆16Feb 1, 2021Updated 5 years ago
- ☆42Aug 29, 2025Updated 7 months ago