psipred / merizo_search
Fast protein domain structure embedding+search tool
☆18Updated last month
Alternatives and similar repositories for merizo_search:
Users that are interested in merizo_search are comparing it to the libraries listed below
- ☆38Updated 7 months ago
- ☆20Updated 2 weeks ago
- ☆22Updated last year
- A domain parser for Alphafold models☆35Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 9 months ago
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 3 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆22Updated 2 months ago
- Detection of remote homology by comparison of protein language model representations☆51Updated 4 months ago
- DeepECtransformer☆24Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆41Updated 3 years ago
- Code for LazyAF pipeline☆20Updated last year
- ☆27Updated 11 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 4 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆14Updated 3 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆42Updated 3 months ago
- Ancestral Sequence Reconstruction in Python☆13Updated 5 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated last month
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆36Updated this week
- Machine learning prediction of enzyme optimum pH☆33Updated last week
- Feature map and function annotation of Proteins☆33Updated 10 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆22Updated last week
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆37Updated 4 months ago
- ☆30Updated last year
- Protein Sequence Annotation with Language Models☆20Updated 6 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- a collection of colabs useful for molecular biology☆30Updated last year
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆19Updated last year