Alternatives and similar repositories for EVcouplings

Users that are interested in EVcouplings are comparing it to the libraries listed below

• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆224Updated 3 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆210Updated last year
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆256Updated 6 months ago
• microsoft / protein-sequence-models
  ☆248Updated 11 months ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆221Updated last year
• KosinskiLab / AlphaPulldown
  ☆281Updated last week
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆174Updated last week
• gjoni / trDesign
  trRosetta for protein design
  ☆182Updated 4 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆109Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆126Updated 3 years ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆151Updated 2 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆160Updated 2 years ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆264Updated last year
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆165Updated 2 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆108Updated last year
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆176Updated this week
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆196Updated 2 months ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆163Updated 10 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆152Updated last year
• Biomatter-Designs / ProteinGAN
  ☆192Updated 3 years ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆314Updated 8 months ago
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆272Updated last month
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆361Updated last year
• tttianhao / CLEAN
  CLEAN: a contrastive learning model for high-quality functional prediction of proteins
  ☆274Updated 3 months ago
• PDB-REDO / dssp
  Application to assign secondary structure to proteins
  ☆202Updated last month
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆365Updated last year
• mxfold / mxfold2
  MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
  ☆135Updated 2 weeks ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆324Updated 2 years ago
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆171Updated last year
• biolists / folding_tools
  A collection of *fold* tools
  ☆295Updated 9 months ago