debbiemarkslab / EVcouplingsLinks
Evolutionary couplings from protein and RNA sequence alignments
☆274Updated 5 months ago
Alternatives and similar repositories for EVcouplings
Users that are interested in EVcouplings are comparing it to the libraries listed below
Sorting:
- A generative latent variable model for biological sequence families.☆232Updated 3 years ago
- Bilingual Language Model for Protein Sequence and Structure☆262Updated 7 months ago
- Efficient evolution from protein language models☆212Updated last year
- Antibody Numbering and Antigen Receptor ClassIfication☆228Updated last year
- ☆286Updated this week
- ☆250Updated last year
- Inference of couplings in proteins and RNAs from sequence variation☆111Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆174Updated last week
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆128Updated 3 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆264Updated last year
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆198Updated 2 months ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆177Updated 2 weeks ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆155Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆154Updated 3 months ago
- Application to assign secondary structure to proteins☆204Updated last week
- Deep functional residue identification☆329Updated 2 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆109Updated last year
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆162Updated 2 years ago
- trRosetta for protein design☆182Updated 4 years ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆276Updated 2 months ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆163Updated 11 months ago
- A collection of *fold* tools☆296Updated 10 months ago
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆171Updated last year
- UniRep model, usage, and examples.☆356Updated 3 years ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆169Updated 2 years ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆369Updated last year
- ☆192Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆316Updated 9 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 4 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆311Updated 6 months ago