Alternatives and similar repositories for EVcouplings

Users that are interested in EVcouplings are comparing it to the libraries listed below

• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆292Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆218Updated 2 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆247Updated 3 years ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆258Updated last year
• KosinskiLab / AlphaPulldown
  ☆301Updated this week
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆186Updated last month
• mmagnus / rna-tools
  🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …
  ☆181Updated last week
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆132Updated 4 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆116Updated 3 years ago
• microsoft / protein-sequence-models
  ☆255Updated last year
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆271Updated last year
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆168Updated last year
• PDB-REDO / dssp
  Application to assign secondary structure to proteins
  ☆236Updated last month
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆170Updated 9 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆167Updated 3 years ago
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆173Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆129Updated 2 years ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆343Updated 2 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆225Updated 8 months ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆112Updated 2 years ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆359Updated 3 years ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆301Updated 5 months ago
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆327Updated 7 months ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆156Updated 2 years ago
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆181Updated 2 years ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆326Updated last year
• tttianhao / CLEAN
  CLEAN: a contrastive learning model for high-quality functional prediction of proteins
  ☆304Updated 9 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆168Updated 2 years ago
• Biomatter-Designs / ProteinGAN
  ☆191Updated 3 years ago