debbiemarkslab / EVcouplingsLinks
Evolutionary couplings from protein and RNA sequence alignments
☆275Updated 5 months ago
Alternatives and similar repositories for EVcouplings
Users that are interested in EVcouplings are comparing it to the libraries listed below
Sorting:
- Bilingual Language Model for Protein Sequence and Structure☆267Updated 7 months ago
- Efficient evolution from protein language models☆213Updated 2 years ago
- A generative latent variable model for biological sequence families.☆233Updated 3 years ago
- Antibody Numbering and Antigen Receptor ClassIfication☆232Updated last year
- ☆289Updated last week
- ☆252Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆155Updated 4 months ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆163Updated 11 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆112Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 3 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆263Updated last year
- trRosetta for protein design☆182Updated 4 years ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆163Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆176Updated last month
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆198Updated 3 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆365Updated last year
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆284Updated 2 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆177Updated last month
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆156Updated last year
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆169Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆317Updated 10 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆316Updated 3 weeks ago
- A collection of *fold* tools☆297Updated 3 weeks ago
- Application to assign secondary structure to proteins☆206Updated last week
- UniRep model, usage, and examples.☆355Updated 3 years ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆116Updated 2 years ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆170Updated 2 years ago
- Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm☆353Updated 2 months ago
- Deep networks for protein functional inference☆176Updated 2 months ago