Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
☆129Nov 19, 2025Updated 3 months ago
Alternatives and similar repositories for ProteinNPT
Users that are interested in ProteinNPT are comparing it to the libraries listed below
Sorting:
- Official repository for the ProteinGym benchmarks☆391Jan 12, 2026Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆162Aug 24, 2023Updated 2 years ago
- ☆80Feb 11, 2026Updated 2 weeks ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆200Sep 18, 2024Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆82May 16, 2025Updated 9 months ago
- Compressing protein structures effectively with torsion angles☆188Feb 10, 2026Updated 3 weeks ago
- ☆117Jan 3, 2026Updated 2 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Code for humanization of antibody and nanobody☆76Aug 28, 2025Updated 6 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆48Jun 30, 2025Updated 8 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated 11 months ago
- ☆117Dec 7, 2022Updated 3 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆148Feb 23, 2026Updated last week
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆236Jul 24, 2025Updated 7 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆125Feb 26, 2025Updated last year
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- Aligning protein generative models with experimental fitness☆119Oct 16, 2025Updated 4 months ago
- ☆209Apr 21, 2025Updated 10 months ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Apr 23, 2024Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆314Jul 19, 2024Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆567Nov 19, 2025Updated 3 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Dec 3, 2024Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆305Jul 25, 2025Updated 7 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆80Oct 24, 2025Updated 4 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 9 months ago
- Official Implementation of IgGM☆179Nov 30, 2025Updated 3 months ago
- ☆32Feb 5, 2025Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆122Feb 7, 2026Updated 3 weeks ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 3 weeks ago
- Directed evolution of proteins in sequence space with gradients☆95Oct 18, 2025Updated 4 months ago
- ☆33Aug 12, 2024Updated last year