Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
☆136Nov 19, 2025Updated 10 months ago
Alternatives and similar repositories for ProteinNPT
Users that are interested in ProteinNPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official repository for the ProteinGym benchmarks☆473Mar 25, 2026Updated 5 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆273Sep 9, 2026Updated 2 weeks ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆46Aug 5, 2025Updated last year
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 7 months ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆206Sep 18, 2024Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆86Oct 24, 2025Updated 10 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Apr 27, 2025Updated last year
- ☆95Feb 11, 2026Updated 7 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- Compressing protein structures effectively with torsion angles☆197Sep 7, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated 2 months ago
- ☆118Jan 3, 2026Updated 8 months ago
- ☆121Dec 7, 2022Updated 3 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆39Apr 2, 2025Updated last year
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆14Apr 23, 2024Updated 2 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆54Dec 3, 2024Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆634Mar 8, 2026Updated 6 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆260Jul 31, 2024Updated 2 years ago
- Aligning protein generative models with experimental fitness☆152Mar 12, 2026Updated 6 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆195Jun 24, 2024Updated 2 years ago
- Directed evolution of proteins in sequence space with gradients☆97Oct 18, 2025Updated 11 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆135Feb 26, 2025Updated last year
- ☆34Feb 5, 2025Updated last year
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆173Sep 12, 2026Updated last week
- ☆214Apr 21, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast protein backbone generation with SE(3) flow matching.☆330Jul 19, 2024Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Aug 27, 2026Updated 3 weeks ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆23Aug 8, 2024Updated 2 years ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆37Dec 8, 2025Updated 9 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆126May 27, 2025Updated last year
- Protein representation and design under a single training scheme☆24May 17, 2026Updated 4 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 10 months ago