Alternatives and similar repositories for provis

Users that are interested in provis are comparing it to the libraries listed below

• lucidrains / protein-bert-pytorch
  Implementation of ProteinBERT in Pytorch
  ☆162Updated 4 years ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆502Updated 2 years ago
• tbepler / protein-sequence-embedding-iclr2019
  Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
  ☆262Updated 4 years ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆719Updated 2 years ago
• songlab-cal / tape-neurips2019
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆121Updated 4 years ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆357Updated 3 years ago
• jonathanking / protein-transformer
  Predicting protein structure through sequence modeling
  ☆112Updated 5 years ago
• seonwoo-min / PLUS
  Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021
  ☆41Updated 2 years ago
• Urinx / alphafold_pytorch
  An implementation of the DeepMind's AlphaFold based on PyTorch for research
  ☆400Updated 4 years ago
• biolib / openprotein
  A PyTorch framework for prediction of tertiary protein structure
  ☆189Updated 4 years ago
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆355Updated last year
• DeepChainBio / bio-transformers
  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
  ☆155Updated 2 years ago
• Biomatter-Designs / ProteinGAN
  ☆190Updated 3 years ago
• nadavbra / protein_bert
  ☆558Updated 6 months ago
• THUDM / ProteinLM
  Protein Language Model
  ☆119Updated last year
• lucidrains / progen
  Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
  ☆112Updated 4 years ago
• microsoft / protein-sequence-models
  ☆254Updated last year
• jingraham / neurips19-graph-protein-design
  Generative Models for Graph-Based Protein Design
  ☆280Updated 4 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆121Updated 5 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆104Updated 4 years ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆74Updated 4 years ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆556Updated last year
• aqlaboratory / rgn
  Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
  ☆325Updated 6 years ago
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆149Updated 2 years ago
• ardigen / MAT
  The official implementation of the Molecule Attention Transformer.
  ☆251Updated 5 years ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆334Updated 2 years ago
• OATML-Markslab / Tranception
  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
  ☆160Updated 2 years ago
• agemagician / Ankh
  Ankh: Optimized Protein Language Model
  ☆235Updated 4 months ago
• ml4bio / e2efold
  pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"
  ☆113Updated last year
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆158Updated 2 years ago