Alternatives and similar repositories for provis

Users that are interested in provis are comparing it to the libraries listed below

• lucidrains / protein-bert-pytorch
  Implementation of ProteinBERT in Pytorch
  ☆164Updated 4 years ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆505Updated 2 years ago
• tbepler / protein-sequence-embedding-iclr2019
  Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
  ☆261Updated 4 years ago
• songlab-cal / tape-neurips2019
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆121Updated 4 years ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆725Updated 3 years ago
• Urinx / alphafold_pytorch
  An implementation of the DeepMind's AlphaFold based on PyTorch for research
  ☆401Updated 4 years ago
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆356Updated last year
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆358Updated 3 years ago
• jonathanking / protein-transformer
  Predicting protein structure through sequence modeling
  ☆112Updated 5 years ago
• nadavbra / protein_bert
  ☆566Updated 8 months ago
• THUDM / ProteinLM
  Protein Language Model
  ☆121Updated last year
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆560Updated 2 years ago
• Biomatter-Designs / ProteinGAN
  ☆191Updated 3 years ago
• DeepChainBio / bio-transformers
  bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
  ☆155Updated 2 years ago
• biolib / openprotein
  A PyTorch framework for prediction of tertiary protein structure
  ☆191Updated 4 years ago
• ardigen / MAT
  The official implementation of the Molecule Attention Transformer.
  ☆251Updated 5 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆122Updated 5 years ago
• microsoft / protein-sequence-models
  ☆253Updated last year
• seonwoo-min / PLUS
  Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021
  ☆41Updated 2 years ago
• yangkevin2 / coronavirus_data
  ☆81Updated 2 years ago
• jingraham / neurips19-graph-protein-design
  Generative Models for Graph-Based Protein Design
  ☆282Updated 5 years ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆220Updated 4 years ago
• lucidrains / progen
  Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
  ☆113Updated 4 years ago
• DSPsleeporg / smiles-transformer
  Original implementation of the paper "SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery" by Shion Honda e…
  ☆348Updated 3 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆104Updated 4 years ago
• dellacortelab / prospr
  ProSPr: Protein Structure Prediction
  ☆420Updated 3 years ago
• agemagician / Ankh
  Ankh: Optimized Protein Language Model
  ☆238Updated 6 months ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆75Updated 5 years ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆530Updated 10 months ago
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆147Updated 2 years ago