salesforce / provisLinks
Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
☆305Updated 9 months ago
Alternatives and similar repositories for provis
Users that are interested in provis are comparing it to the libraries listed below
Sorting:
- Get protein embeddings from protein sequences☆505Updated 2 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆732Updated 3 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Updated 4 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Updated 4 years ago
- Implementation of ProteinBERT in Pytorch☆164Updated 4 years ago
- An all-atom protein structure dataset for machine learning.☆358Updated last year
- UniRep model, usage, and examples.☆359Updated 3 years ago
- Predicting protein structure through sequence modeling☆112Updated 5 years ago
- ☆571Updated 10 months ago
- A PyTorch framework for prediction of tertiary protein structure☆191Updated 4 years ago
- ☆191Updated 3 years ago
- An implementation of the DeepMind's AlphaFold based on PyTorch for research☆401Updated 5 years ago
- Protein Language Model☆121Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Updated 5 years ago
- ☆255Updated last year
- Official Pytorch implementation of PLUS (Protein sequence representations Learned Using Structural information), IEEE Access 2021☆41Updated 2 years ago
- Generative Models for Graph-Based Protein Design☆284Updated 5 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆562Updated 2 years ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆154Updated 2 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Updated 4 years ago
- The official implementation of the Molecule Attention Transformer.☆251Updated 5 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆105Updated 4 years ago
- ProSPr: Protein Structure Prediction☆419Updated 3 years ago
- Original implementation of the paper "SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery" by Shion Honda e…☆351Updated 3 years ago
- Recurrent Geometric Networks for end-to-end differentiable learning of protein structure☆325Updated 6 years ago
- Protein-compound affinity prediction through unified RNN-CNN☆153Updated last year
- Language modeling of viral evolution☆148Updated 2 years ago
- Ankh: Optimized Protein Language Model☆238Updated 7 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Updated 5 years ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆534Updated 11 months ago