Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
☆305May 1, 2025Updated last year
Alternatives and similar repositories for provis
Users that are interested in provis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆741Dec 11, 2022Updated 3 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,321May 22, 2025Updated last year
- PaccMann models for protein language modeling☆44Nov 10, 2021Updated 4 years ago
- Protein Language Model☆124Jan 15, 2024Updated 2 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Aug 7, 2021Updated 5 years ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- ☆580Apr 7, 2026Updated 4 months ago
- UniRep model, usage, and examples.☆366Mar 1, 2026Updated 5 months ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆114Sep 8, 2021Updated 4 years ago
- Listing of papers about machine learning for proteins.☆1,713May 31, 2024Updated 2 years ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,171Feb 7, 2024Updated 2 years ago
- ☆27May 9, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Multi-task and masked language model-based protein sequence embedding models.☆106Jun 16, 2021Updated 5 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆123Sep 15, 2020Updated 5 years ago
- Ankh: Optimized Protein Language Model☆249Jun 16, 2025Updated last year
- Predicting protein structure through sequence modeling☆112May 4, 2020Updated 6 years ago
- Standardized data set for machine learning of protein structure☆918Nov 18, 2020Updated 5 years ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- ☆137Sep 14, 2022Updated 3 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- ☆110Mar 7, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- trRosetta for protein design☆183May 15, 2021Updated 5 years ago
- ☆34Oct 5, 2020Updated 5 years ago
- Protein function prediction using a variational autoencoder☆95Mar 7, 2018Updated 8 years ago
- An all-atom protein structure dataset for machine learning.☆366Mar 16, 2024Updated 2 years ago
- ☆259Jul 31, 2024Updated 2 years ago
- Implementation of ProteinBERT in Pytorch☆165Aug 10, 2021Updated 5 years ago
- Protein Graph Library☆1,187Jul 13, 2026Updated 3 weeks ago
- ☆189Feb 8, 2022Updated 4 years ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,411Dec 16, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆766Jun 19, 2024Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 4 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆37Sep 2, 2025Updated 11 months ago
- pytorch implementation of trDesign☆45Mar 19, 2021Updated 5 years ago
- A collection of *fold* tools☆304Aug 8, 2025Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆62Apr 8, 2021Updated 5 years ago
- ATOM3D: tasks on molecules in three dimensions☆319Mar 2, 2023Updated 3 years ago