Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
☆305May 1, 2025Updated last year
Alternatives and similar repositories for provis
Users that are interested in provis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆739Dec 11, 2022Updated 3 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,310May 22, 2025Updated last year
- PaccMann models for protein language modeling☆44Nov 10, 2021Updated 4 years ago
- Protein Language Model☆124Jan 15, 2024Updated 2 years ago
- Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019☆262Jun 16, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆121Aug 7, 2021Updated 4 years ago
- Get protein embeddings from protein sequences☆508Apr 28, 2023Updated 3 years ago
- ☆576Apr 7, 2026Updated 2 months ago
- UniRep model, usage, and examples.☆365Mar 1, 2026Updated 3 months ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆114Sep 8, 2021Updated 4 years ago
- Listing of papers about machine learning for proteins.☆1,707May 31, 2024Updated 2 years ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,114Feb 7, 2024Updated 2 years ago
- ☆26May 9, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Multi-task and masked language model-based protein sequence embedding models.☆106Jun 16, 2021Updated 4 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆123Sep 15, 2020Updated 5 years ago
- Ankh: Optimized Protein Language Model☆247Jun 16, 2025Updated 11 months ago
- Predicting protein structure through sequence modeling☆112May 4, 2020Updated 6 years ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- Standardized data set for machine learning of protein structure☆916Nov 18, 2020Updated 5 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- ☆110Mar 7, 2022Updated 4 years ago
- ☆34Oct 5, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- trRosetta for protein design☆183May 15, 2021Updated 5 years ago
- Protein function prediction using a variational autoencoder☆94Mar 7, 2018Updated 8 years ago
- ☆258Jul 31, 2024Updated last year
- An all-atom protein structure dataset for machine learning.☆365Mar 16, 2024Updated 2 years ago
- Implementation of ProteinBERT in Pytorch☆165Aug 10, 2021Updated 4 years ago
- Protein Graph Library☆1,172May 25, 2026Updated 2 weeks ago
- ☆191Feb 8, 2022Updated 4 years ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,375Dec 16, 2025Updated 5 months ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆759Jun 19, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 4 years ago
- A collection of *fold* tools☆305Aug 8, 2025Updated 10 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆37Sep 2, 2025Updated 9 months ago
- ATOM3D: tasks on molecules in three dimensions☆319Mar 2, 2023Updated 3 years ago
- DISTEVAL: A web-server for evaluating protein inter-residue distances☆18Mar 7, 2022Updated 4 years ago
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆155Oct 11, 2023Updated 2 years ago
- pytorch implementation of trDesign☆45Mar 19, 2021Updated 5 years ago