Alternatives and similar repositories for SVD-of-MSAs

Users that are interested in SVD-of-MSAs are comparing it to the libraries listed below

• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• LDeng0205 / StaB-ddG
  Predicting mutational effects on protein binding from folding energy. ICML 2025.
  ☆30Updated 2 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆40Updated last week
• StatPhysBio / protein_holography
  Code for holographic machine learning of proteins
  ☆24Updated 11 months ago
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated 2 years ago
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated 2 weeks ago
• 3BioCompBio / RSALOR
  ☆35Updated last month
• matmi8 / Zernike2D
  ☆10Updated 5 months ago
• Vincentx15 / atomsurf
  ☆23Updated 3 weeks ago
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 2 months ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated this week
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆54Updated 4 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆32Updated last year
• ohuelab / ColabDesign-cyclic-binder
  ☆35Updated 2 years ago
• Marco-Peg / GEP
  ☆15Updated last year
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆66Updated 4 months ago
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆58Updated last month
• stracquadaniolab / prevent-nf
  PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion
  ☆12Updated last year
• brennanaba / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆32Updated 2 years ago
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆16Updated 8 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• issararab / PEvoLM
  Protein Sequence Evolutionary Information Language Model
  ☆13Updated 2 years ago
• HannesStark / CodonMPNN
  ☆28Updated 9 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• Lailabcode / DeepViscosity
  DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…
  ☆16Updated 2 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆79Updated 7 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 11 months ago
• ai4protein / VenusX
  ☆13Updated 2 weeks ago
• BioinfoMachineLearning / GCPNet
  A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)
  ☆47Updated 5 months ago