Alternatives and similar repositories for SVD-of-MSAs:

Users that are interested in SVD-of-MSAs are comparing it to the libraries listed below

• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆33Updated 9 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆26Updated last year
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆13Updated last month
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆28Updated last week
• bwicky / oligomer_hallucination
  ☆36Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆42Updated 3 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆31Updated 3 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆28Updated last week
• uw-ipd / tmol
  TMol
  ☆32Updated this week
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆45Updated last week
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆27Updated 2 years ago
• NRGlab / Surfaces
  ☆14Updated 3 weeks ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆40Updated this week
• karma211225 / KarmaLoop
  Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop
  ☆11Updated 9 months ago
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆17Updated last year
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated this week
• ohuelab / ColabDesign-cyclic-binder
  ☆31Updated last year
• clami66 / dgram2dmap
  Converts AlphaFold distograms into distance matrices and saves them into a number of formats
  ☆11Updated 2 years ago
• ShenLab / SeqDance
  code for SeqDance, a biophysics-informed protein language model
  ☆22Updated 5 months ago
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆19Updated last year
• aqlaboratory / QuickBind
  A Light-Weight And Interpretable Molecular Docking Model
  ☆20Updated 5 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆62Updated 3 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆33Updated 6 months ago
• LSSI-ETH / meta-learning-for-protein-engineering
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…
  ☆20Updated 7 months ago