Neural Networks for Protein Sequence Alignment
☆141Nov 11, 2024Updated last year
Alternatives and similar repositories for deepblast
Users that are interested in deepblast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆76Sep 25, 2024Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆65Dec 16, 2024Updated last year
- ☆137Sep 14, 2022Updated 4 years ago
- "Rewriting protein alphabets with language models"☆26Oct 2, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆191Updated this week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,308Sep 9, 2026Updated last month
- Deep functional residue identification☆355Mar 24, 2023Updated 3 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- ☆15Mar 28, 2025Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Deep networks for protein functional inference☆196Mar 11, 2026Updated 7 months ago
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆82Sep 9, 2025Updated last year
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- Discovery of conserved gene clusters in multiple genomes☆135Sep 30, 2026Updated 2 weeks ago
- ☆31Oct 20, 2023Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆325Mar 6, 2026Updated 7 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,325May 22, 2025Updated last year
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- sensitive and precise assembly of short sequencing reads☆171Oct 11, 2024Updated 2 years ago
- Evolutionary velocity with protein language models☆102Dec 9, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Functional ANnoTAtion based on embedding space SImilArity☆22Sep 26, 2026Updated 2 weeks ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆638Mar 8, 2026Updated 7 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation☆16Jun 16, 2025Updated last year
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,152Sep 30, 2026Updated 2 weeks ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆42Aug 29, 2025Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Algorithm for ultra-scale multiple protein sequence alignments: 3 million ABC transporters analyzed in 5 minutes and 18 GB of RAM.☆273Sep 10, 2026Updated last month
- Tutorial files☆12Aug 7, 2024Updated 2 years ago
- Listing of papers about machine learning for proteins.☆1,720May 31, 2024Updated 2 years ago
- An all-atom protein structure dataset for machine learning.☆365Mar 16, 2024Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆476Mar 25, 2026Updated 6 months ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated 2 years ago