Neural Networks for Protein Sequence Alignment
☆135Nov 11, 2024Updated last year
Alternatives and similar repositories for deepblast
Users that are interested in deepblast are comparing it to the libraries listed below
Sorting:
- ☆76Sep 25, 2024Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆61Dec 16, 2024Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,172Updated this week
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Feb 4, 2026Updated last month
- Deep functional residue identification☆349Mar 24, 2023Updated 2 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- Deep networks for protein functional inference☆186Feb 20, 2026Updated 2 weeks ago
- Bilingual Language Model for Protein Sequence and Structure☆301Jan 2, 2025Updated last year
- ☆30Oct 20, 2023Updated 2 years ago
- Fast protein structure searching or your money back☆118Jan 14, 2026Updated last month
- Official repository for the ProteinGym benchmarks☆391Jan 12, 2026Updated last month
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Evolutionary velocity with protein language models☆97Dec 9, 2025Updated 2 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Multiple Protein Structure Alignment at Scale with FoldMason☆253Jan 31, 2026Updated last month
- sensitive and precise assembly of short sequencing reads☆163Oct 11, 2024Updated last year
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 3 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,292May 22, 2025Updated 9 months ago
- A collection of *fold* tools☆302Aug 8, 2025Updated 6 months ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- Tutorial files☆12Aug 7, 2024Updated last year
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆567Nov 19, 2025Updated 3 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Sep 9, 2025Updated 5 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆221Jan 10, 2026Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 6 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated 11 months ago
- Independent evaluation set construction for trustworthy ML models in biochemistry☆16Feb 18, 2026Updated 2 weeks ago
- An all-atom protein structure dataset for machine learning.☆359Mar 16, 2024Updated last year
- Remote protein homology detection suite.☆615Aug 12, 2025Updated 6 months ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 10 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆305Apr 6, 2025Updated 11 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,984Feb 21, 2026Updated last week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated last year