Neural Networks for Protein Sequence Alignment
☆135Nov 11, 2024Updated last year
Alternatives and similar repositories for deepblast
Users that are interested in deepblast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆76Sep 25, 2024Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆61Dec 16, 2024Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,196Mar 10, 2026Updated 2 weeks ago
- Deep functional residue identification☆349Mar 24, 2023Updated 3 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆176Feb 4, 2026Updated last month
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- ☆16Mar 28, 2025Updated 11 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Sep 9, 2025Updated 6 months ago
- Deep networks for protein functional inference☆186Mar 11, 2026Updated 2 weeks ago
- Fast protein structure searching or your money back☆118Mar 17, 2026Updated last week
- A collection of *fold* tools☆302Aug 8, 2025Updated 7 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆306Mar 6, 2026Updated 3 weeks ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,293May 22, 2025Updated 10 months ago
- sensitive and precise assembly of short sequencing reads☆163Oct 11, 2024Updated last year
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated last year
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 3 months ago
- ☆30Oct 20, 2023Updated 2 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆264Jan 31, 2026Updated last month
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆572Mar 8, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆222Updated this week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 6 months ago
- Official repository for the ProteinGym benchmarks☆402Jan 12, 2026Updated 2 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,005Mar 9, 2026Updated 2 weeks ago
- ☆31Nov 23, 2025Updated 4 months ago
- Tutorial files☆12Aug 7, 2024Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- An all-atom protein structure dataset for machine learning.☆360Mar 16, 2024Updated 2 years ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated last year
- Listing of papers about machine learning for proteins.☆1,691May 31, 2024Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,009Feb 7, 2024Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago