Generative Models for Graph-Based Protein Design
☆288Dec 24, 2020Updated 5 years ago
Alternatives and similar repositories for neurips19-graph-protein-design
Users that are interested in neurips19-graph-protein-design are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆321Nov 15, 2025Updated 5 months ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 2 years ago
- Code for the ProteinMPNN paper☆1,700Aug 14, 2024Updated last year
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆163May 1, 2021Updated 4 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆742Jun 19, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- List of papers about Proteins Design using Deep Learning☆1,917Apr 10, 2026Updated last week
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆318Jun 13, 2025Updated 10 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆736Dec 11, 2022Updated 3 years ago
- Official repository for the ProteinGym benchmarks☆416Mar 25, 2026Updated 3 weeks ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,034Feb 7, 2024Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆281Mar 30, 2023Updated 3 years ago
- trRosetta for protein design☆185May 15, 2021Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆83Sep 8, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Making Protein Design accessible to all via Google Colab!☆903Apr 6, 2026Updated last week
- ☆214Sep 24, 2024Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆567Dec 12, 2023Updated 2 years ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆202Sep 18, 2024Updated last year
- Deep functional residue identification☆349Mar 24, 2023Updated 3 years ago
- ☆137Jun 3, 2025Updated 10 months ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆542Feb 19, 2025Updated last year
- A generative model for programmable protein design☆810Apr 11, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆185Apr 21, 2024Updated last year
- ☆259Jul 31, 2024Updated last year
- Listing of papers about machine learning for proteins.☆1,697May 31, 2024Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆418Jul 3, 2023Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆322Jul 19, 2024Updated last year
- ☆109Apr 1, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ATOM3D: tasks on molecules in three dimensions☆318Mar 2, 2023Updated 3 years ago
- OmegaFold Release Code☆618Dec 12, 2022Updated 3 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆166Aug 24, 2023Updated 2 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- A collection of *fold* tools☆304Aug 8, 2025Updated 8 months ago
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- Official release of the ProGen models☆698Aug 4, 2023Updated 2 years ago