Generative Models for Graph-Based Protein Design
☆292Dec 24, 2020Updated 5 years ago
Alternatives and similar repositories for neurips19-graph-protein-design
Users that are interested in neurips19-graph-protein-design are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆329Nov 15, 2025Updated 11 months ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 3 years ago
- Code for the ProteinMPNN paper☆1,901Aug 14, 2024Updated 2 years ago
- ☆221Sep 24, 2024Updated 2 years ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆164May 1, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- List of papers about Proteins Design using Deep Learning☆1,983Aug 15, 2026Updated 2 months ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆788Jun 19, 2024Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆947Oct 14, 2026Updated 3 weeks ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆331Jun 13, 2025Updated last year
- trRosetta for protein design☆184May 15, 2021Updated 5 years ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆207Oct 14, 2026Updated 3 weeks ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆746Dec 11, 2022Updated 3 years ago
- Database of Interacting Protein Structures (DIPS)☆106Jan 26, 2024Updated 2 years ago
- Deep functional residue identification☆355Mar 24, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 4 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,176Feb 7, 2024Updated 2 years ago
- ☆144Jun 3, 2025Updated last year
- Diffusion models of protein structure; trigonometry and attention are all you need!☆568Sep 9, 2026Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆427Jul 3, 2023Updated 3 years ago
- A generative model for programmable protein design☆835Oct 13, 2026Updated 3 weeks ago
- Protein hallucination and inpainting with RoseTTAFold☆284Mar 30, 2023Updated 3 years ago
- ☆261Jul 31, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆334Oct 28, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ATOM3D: tasks on molecules in three dimensions☆319Mar 2, 2023Updated 3 years ago
- A generative latent variable model for biological sequence families.☆258Mar 15, 2022Updated 4 years ago
- Official repository for the ProteinGym benchmarks☆485Mar 25, 2026Updated 7 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆191Apr 21, 2024Updated 2 years ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆370Jun 29, 2023Updated 3 years ago
- Listing of papers about machine learning for proteins.☆1,719May 31, 2024Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 3 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Sep 8, 2023Updated 3 years ago
- ☆110Apr 1, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Official release of the ProGen models☆708Jun 2, 2026Updated 5 months ago
- Diffusion-based all-atom protein generative model.☆238Aug 27, 2025Updated last year
- open source repository☆149Nov 30, 2023Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆328Jul 19, 2024Updated 2 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆646Mar 8, 2026Updated 7 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,323May 22, 2025Updated last year
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆585Apr 3, 2026Updated 7 months ago