Generative Models for Graph-Based Protein Design
☆286Dec 24, 2020Updated 5 years ago
Alternatives and similar repositories for neurips19-graph-protein-design
Users that are interested in neurips19-graph-protein-design are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆319Nov 15, 2025Updated 4 months ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 2 years ago
- Code for the ProteinMPNN paper☆1,677Aug 14, 2024Updated last year
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆164May 1, 2021Updated 4 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆737Jun 19, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- List of papers about Proteins Design using Deep Learning☆1,905Mar 21, 2026Updated last week
- Database of Interacting Protein Structures (DIPS)☆105Jan 26, 2024Updated 2 years ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆317Jun 13, 2025Updated 9 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆734Dec 11, 2022Updated 3 years ago
- Official repository for the ProteinGym benchmarks☆405Updated this week
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,009Feb 7, 2024Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆280Mar 30, 2023Updated 2 years ago
- trRosetta for protein design☆184May 15, 2021Updated 4 years ago
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Making Protein Design accessible to all via Google Colab!☆895Mar 10, 2026Updated 2 weeks ago
- ☆214Sep 24, 2024Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆201Sep 18, 2024Updated last year
- Deep functional residue identification☆349Mar 24, 2023Updated 3 years ago
- ☆135Jun 3, 2025Updated 9 months ago
- EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein☆541Feb 19, 2025Updated last year
- A generative model for programmable protein design☆804Apr 11, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 3 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆330Oct 28, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- ☆256Jul 31, 2024Updated last year
- Listing of papers about machine learning for proteins.☆1,691May 31, 2024Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆319Jul 19, 2024Updated last year
- ☆109Apr 1, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆165Aug 24, 2023Updated 2 years ago
- ATOM3D: tasks on molecules in three dimensions☆318Mar 2, 2023Updated 3 years ago
- OmegaFold Release Code☆615Dec 12, 2022Updated 3 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- A collection of *fold* tools☆302Aug 8, 2025Updated 7 months ago
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- Official release of the ProGen models☆694Aug 4, 2023Updated 2 years ago