seanrjohnson / protein_gibbs_samplerView external linksLinks
Gibbs sampling for generating protein sequences
☆58Jan 17, 2025Updated last year
Alternatives and similar repositories for protein_gibbs_sampler
Users that are interested in protein_gibbs_sampler are comparing it to the libraries listed below
Sorting:
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Dec 1, 2025Updated 2 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Nov 5, 2025Updated 3 months ago
- ☆82Jun 29, 2025Updated 7 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆95Dec 10, 2025Updated 2 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆72Jul 2, 2025Updated 7 months ago
- Reference-free analysis of genetic architecture☆21Sep 21, 2024Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆47Nov 4, 2025Updated 3 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆225Aug 7, 2025Updated 6 months ago
- ☆30Oct 7, 2025Updated 4 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Mar 6, 2025Updated 11 months ago
- ☆212Sep 24, 2024Updated last year
- Protein stability prediction using rewired protein generative models☆63Dec 25, 2025Updated last month
- Aligning protein generative models with experimental fitness☆117Oct 16, 2025Updated 4 months ago
- Protein representation and design under a single training scheme☆24Dec 17, 2025Updated last month
- VenusFSFP: Few-Shot Protein Fitness Prediction☆106Nov 18, 2025Updated 2 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Oct 24, 2025Updated 3 months ago
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated last year
- Steering discrete diffusion models with labeled data for protein fitness optimization☆28Nov 1, 2025Updated 3 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Sep 30, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆230Aug 27, 2025Updated 5 months ago
- Template-based protein design with Raygun☆77Feb 7, 2026Updated last week
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆163Jul 30, 2025Updated 6 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated 11 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 8 months ago
- ☆134Jun 3, 2025Updated 8 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆50Mar 21, 2024Updated last year
- Official repository for the ProteinGym benchmarks☆388Jan 12, 2026Updated last month
- An accurate and efficient protein sequence design approach☆27Mar 16, 2025Updated 11 months ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆26Mar 8, 2025Updated 11 months ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Aug 7, 2020Updated 5 years ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆13Jan 23, 2026Updated 3 weeks ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆28Jan 17, 2024Updated 2 years ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- Directed evolution of proteins in sequence space with gradients☆95Oct 18, 2025Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆70Jan 31, 2024Updated 2 years ago
- Generative diverse protein backbones by protein language model☆34Oct 30, 2025Updated 3 months ago
- ☆31Dec 12, 2024Updated last year