Alternatives and similar repositories for protein_gibbs_sampler:

Users that are interested in protein_gibbs_sampler are comparing it to the libraries listed below

• idlutz / protein-backbone-MCTS
  ☆46Updated 6 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆36Updated 7 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆34Updated last month
• Kuhlman-Lab / evopro
  ☆72Updated 8 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆58Updated 3 years ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆79Updated 2 months ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆23Updated 4 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆44Updated 3 weeks ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆27Updated 4 months ago
• tyang816 / ProtSSN
  Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024…
  ☆51Updated last week
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆35Updated last month
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆96Updated 3 weeks ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆32Updated 3 years ago
• jproney / AF2Rank
  ☆97Updated 2 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆60Updated last month
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆57Updated this week
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆63Updated 2 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆39Updated last month
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆87Updated 5 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆61Updated 11 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆68Updated this week
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆22Updated last month
• ELELAB / RosettaDDGPrediction
  ☆56Updated last month
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆44Updated last month
• jvkersch / tmtools
  Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.
  ☆32Updated last month
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆54Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆45Updated 3 weeks ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• alexechu / protpardelle
  ☆66Updated last year
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆27Updated 7 months ago