Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to query protein embedding.
☆41Aug 29, 2025Updated last year
Alternatives and similar repositories for EAT
Users that are interested in EAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transformer for protein function prediction (version 2)☆14Aug 31, 2026Updated 2 weeks ago
- ☆51Dec 2, 2024Updated last year
- Protein-protein binding affinity benchmark☆20Feb 14, 2025Updated last year
- Assembling phage particles one protein at a time☆26Aug 3, 2026Updated last month
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆33Jan 8, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A collection of *fold* tools☆303Aug 8, 2025Updated last year
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- ☆27May 9, 2022Updated 4 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,323May 22, 2025Updated last year
- ☆30Apr 2, 2026Updated 5 months ago
- Ankh: Optimized Protein Language Model☆250Jun 16, 2025Updated last year
- Get protein embeddings from protein sequences☆510Apr 28, 2023Updated 3 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆21Feb 6, 2023Updated 3 years ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,296Sep 9, 2026Updated last week
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆99Jan 24, 2023Updated 3 years ago
- ☆20Mar 31, 2021Updated 5 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆12Jun 2, 2022Updated 4 years ago
- ☆110Mar 7, 2022Updated 4 years ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆39Jul 28, 2022Updated 4 years ago
- Render viral capsids in the browser and export SVG.☆12Aug 2, 2026Updated last month
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- DistilProtBert implementation, a distilled version of ProtBert model.☆15Sep 21, 2022Updated 3 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- Rank homologous protein sequences based on a regressor trained on experimental measures☆17Apr 11, 2025Updated last year
- ☆17Nov 11, 2022Updated 3 years ago
- ☆27Dec 6, 2022Updated 3 years ago
- Deep networks for protein functional inference☆195Mar 11, 2026Updated 6 months ago
- Protein sequence classification with self-supervised pretraining☆82Nov 29, 2021Updated 4 years ago
- ☆18Dec 10, 2022Updated 3 years ago
- ☆121Dec 7, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆11Feb 21, 2023Updated 3 years ago
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 2 years ago
- Analysis and figure code from Alley et al. 2019.☆60Mar 25, 2023Updated 3 years ago
- ☆53Sep 25, 2024Updated last year
- HiCOPS: Computational framework for peptide identification from MS data through accelerated database search☆10Mar 24, 2023Updated 3 years ago
- Bilingual Language Model for Protein Sequence and Structure☆321Mar 6, 2026Updated 6 months ago
- A comprehensive resource of binding sites on human surface proteins with binder seeds☆16Feb 26, 2025Updated last year