Rostlab / EATLinks
Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to query protein embedding.
☆38Updated 4 months ago
Alternatives and similar repositories for EAT
Users that are interested in EAT are comparing it to the libraries listed below
Sorting:
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- ☆46Updated last year
- ☆31Updated last year
- ☆36Updated 11 months ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- Alignment-free structure prediction using protein language models☆22Updated 3 years ago
- Detection of remote homology by comparison of protein language model representations☆59Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 4 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆60Updated 8 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆16Updated 11 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Machine learning prediction of enzyme optimum pH☆48Updated 8 months ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆74Updated last year
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 3 months ago
- ☆23Updated last month
- ☆76Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- A domain parser for Alphafold models☆46Updated 2 years ago
- Biological prediction models made simple.☆47Updated last month
- Fast protein domain structure embedding+search tool☆27Updated 3 months ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24Updated last year
- ☆25Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆65Updated 5 months ago
- Ultra-fast in-silico structure mutation☆36Updated 8 months ago
- Direct coupling analysis software for protein and RNA sequences☆53Updated 5 months ago
- Protein language model trained on coding DNA☆52Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Python package to manage protein structures and their annotations☆45Updated last year