Alternatives and similar repositories for EAT

Users that are interested in EAT are comparing it to the libraries listed below

• tymor22 / tm-vec
  ☆68Updated 9 months ago
• JudeWells / chainsaw
  ☆40Updated 9 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• kWeissenow / EMBER2
  Alignment-free structure prediction using protein language models
  ☆22Updated 2 years ago
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆45Updated 2 weeks ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated last month
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated last month
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 6 months ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆15Updated 5 months ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 2 months ago
• Doudna-lab / GARNET_DL
  ☆37Updated 5 months ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• fhalab / SPGen
  ☆19Updated 4 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 8 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• Eryk96 / NetSurfP-3.0
  NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction
  ☆20Updated 2 years ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆51Updated last month
• UCLOrengoGroup / cath-alphaflow
  ☆21Updated last month
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆28Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆21Updated 3 weeks ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆43Updated last month
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 4 years ago
• TobiasHeOl / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆17Updated 3 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated last month
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated last month