Rostlab / EATLinks
Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to query protein embedding.
☆37Updated 5 months ago
Alternatives and similar repositories for EAT
Users that are interested in EAT are comparing it to the libraries listed below
Sorting:
- ☆41Updated 9 months ago
- A domain parser for Alphafold models☆38Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆46Updated 2 weeks ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 3 months ago
- ☆30Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- Machine learning prediction of enzyme optimum pH☆44Updated 2 months ago
- ☆22Updated last month
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 7 months ago
- Fast protein domain structure embedding+search tool☆21Updated last month
- ☆68Updated 9 months ago
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- Ultra-fast in-silico structure mutation☆34Updated 3 months ago
- ☆35Updated 6 months ago
- Biological prediction models made simple.☆44Updated last week
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆21Updated last month
- Graph Network for protein-protein interface including language model features☆32Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Python package to manage protein structures and their annotations☆43Updated last year
- ☆50Updated 3 months ago
- Fast and accurate protein structure prediction☆53Updated 6 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆45Updated 2 months ago
- ☆70Updated 9 months ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated 2 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆40Updated last year
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 2 years ago
- ☆22Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago