Alternatives and similar repositories for DeepFRI

Users that are interested in DeepFRI are comparing it to the libraries listed below

• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆122Updated 5 years ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆290Updated last year
• microsoft / protein-sequence-models
  ☆255Updated last year
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆246Updated 3 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆218Updated 2 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆104Updated 4 years ago
• tttianhao / CLEAN
  CLEAN: a contrastive learning model for high-quality functional prediction of proteins
  ☆303Updated 9 months ago
• Biomatter-Designs / ProteinGAN
  ☆191Updated 3 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆295Updated 2 months ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆130Updated 4 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆183Updated 4 years ago
• mxfold / mxfold2
  MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
  ☆154Updated this week
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆189Updated last year
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆258Updated last year
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆112Updated 2 years ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆276Updated 2 years ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆326Updated last year
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆155Updated 2 years ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆168Updated last year
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆223Updated 8 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆170Updated 8 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆300Updated 5 months ago
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆179Updated 2 years ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆505Updated 2 years ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆372Updated last year
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆150Updated 3 months ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆359Updated 3 years ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆106Updated last week