Alternatives and similar repositories for DeepFRI:

Users that are interested in DeepFRI are comparing it to the libraries listed below

• microsoft / protein-sequence-models
  ☆236Updated 6 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆217Updated last month
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆186Updated last year
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆250Updated last year
• Biomatter-Designs / ProteinGAN
  ☆193Updated 3 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆177Updated 3 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆99Updated 3 years ago
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆254Updated 2 months ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆213Updated 2 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆122Updated 3 years ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆303Updated last year
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆156Updated 5 months ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆169Updated 5 months ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆164Updated 6 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆301Updated 3 months ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆348Updated 2 years ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆475Updated last year
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆346Updated 8 months ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆269Updated 3 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆144Updated last year
• jingraham / neurips19-graph-protein-design
  Generative Models for Graph-Based Protein Design
  ☆268Updated 4 years ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆156Updated 2 years ago
• jertubiana / ScanNet
  ☆119Updated last year
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆213Updated 3 years ago
• octavian-ganea / equidock_public
  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
  ☆236Updated last year
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆623Updated 7 months ago
• tttianhao / CLEAN
  CLEAN: a contrastive learning model for high-quality functional prediction of proteins
  ☆245Updated 6 months ago
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆246Updated 3 weeks ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago