flatironinstitute / DeepFRILinks
Deep functional residue identification
☆347Updated 2 years ago
Alternatives and similar repositories for DeepFRI
Users that are interested in DeepFRI are comparing it to the libraries listed below
Sorting:
- Bilingual Language Model for Protein Sequence and Structure☆297Updated last year
- A generative latent variable model for biological sequence families.☆247Updated 3 years ago
- ☆255Updated last year
- ☆191Updated 4 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆297Updated 3 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Updated 5 years ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆304Updated 10 months ago
- Efficient evolution from protein language models☆220Updated 2 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆105Updated 4 years ago
- trRosetta for protein design☆183Updated 4 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆133Updated 4 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆191Updated last year
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆225Updated 8 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆112Updated 2 years ago
- Antibody Numbering and Antigen Receptor ClassIfication☆262Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆375Updated last year
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆168Updated last year
- Get protein embeddings from protein sequences☆505Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆279Updated 2 years ago
- RiboNucleic Acid (RNA) Language Model☆155Updated 4 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆170Updated 2 years ago
- A collection of *fold* tools☆302Updated 6 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆326Updated last year
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆183Updated 2 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆159Updated last week
- ☆127Updated 4 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Updated last week
- Official repository for the ProteinGym benchmarks☆386Updated 3 weeks ago
- A package to predict protein inter-residue geometries from sequence data☆222Updated 4 years ago