Deep functional residue identification
☆353Mar 24, 2023Updated 3 years ago
Alternatives and similar repositories for DeepFRI
Users that are interested in DeepFRI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generative Models for Graph-Based Protein Design☆291Dec 24, 2020Updated 5 years ago
- Compressing protein structures effectively with torsion angles☆195Aug 3, 2026Updated last week
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆50Updated this week
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,322May 22, 2025Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,170Feb 7, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Deep networks for protein functional inference☆191Mar 11, 2026Updated 5 months ago
- Neural Networks for Protein Sequence Alignment☆139Nov 11, 2024Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆185Jul 19, 2026Updated 3 weeks ago
- ☆77Sep 25, 2024Updated last year
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆330Jun 13, 2025Updated last year
- ☆189Feb 8, 2022Updated 4 years ago
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆767Jun 19, 2024Updated 2 years ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆326Nov 15, 2025Updated 8 months ago
- ☆12Dec 2, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- open source repository☆149Nov 30, 2023Updated 2 years ago
- ☆211Apr 21, 2025Updated last year
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆324Apr 6, 2025Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,279Updated this week
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆741Dec 11, 2022Updated 3 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated last year
- ☆259Jul 31, 2024Updated 2 years ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆66Mar 4, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- UniRep model, usage, and examples.☆366Mar 1, 2026Updated 5 months ago
- ☆581Apr 7, 2026Updated 4 months ago
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,127Updated this week
- Code for the ProteinMPNN paper☆1,824Aug 14, 2024Updated 2 years ago
- A domain parser for Alphafold models☆49Dec 12, 2023Updated 2 years ago
- Code for Fold2Seq paper from ICML 2021☆50May 25, 2022Updated 4 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆263Mar 26, 2026Updated 4 months ago
- A generative latent variable model for biological sequence families.☆256Mar 15, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official release of the ProGen models☆705Jun 2, 2026Updated 2 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆379Jun 3, 2024Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆277Apr 27, 2025Updated last year
- Protein Graph Library☆1,187Updated this week
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆620Mar 8, 2026Updated 5 months ago
- OmegaFold Release Code☆625Dec 12, 2022Updated 3 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆313Apr 20, 2026Updated 3 months ago