flatironinstitute / DeepFRILinks
Deep functional residue identification
☆334Updated 2 years ago
Alternatives and similar repositories for DeepFRI
Users that are interested in DeepFRI are comparing it to the libraries listed below
Sorting:
- A generative latent variable model for biological sequence families.☆241Updated 3 years ago
- ☆253Updated last year
- Efficient evolution from protein language models☆217Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆274Updated 9 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆121Updated 5 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆103Updated 4 years ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆288Updated 6 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆284Updated this week
- ☆190Updated 3 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 3 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆366Updated last year
- trRosetta for protein design☆183Updated 4 years ago
- A collection of *fold* tools☆300Updated 2 months ago
- Antibody Numbering and Antigen Receptor ClassIfication☆237Updated last year
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆205Updated 5 months ago
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆164Updated last year
- Get protein embeddings from protein sequences☆500Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆358Updated 3 months ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆164Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆147Updated 3 months ago
- ☆127Updated 4 years ago
- Protein hallucination and inpainting with RoseTTAFold☆270Updated 2 years ago
- predicting peptide-protein interactions☆135Updated last year
- Nature Methods: RNA foundation model (together with RhoFold)☆312Updated 5 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆322Updated 11 months ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆300Updated 4 months ago
- ☆107Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆163Updated 6 months ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆171Updated 2 years ago