Deep functional residue identification
☆349Mar 24, 2023Updated 2 years ago
Alternatives and similar repositories for DeepFRI
Users that are interested in DeepFRI are comparing it to the libraries listed below
Sorting:
- Compressing protein structures effectively with torsion angles☆188Feb 10, 2026Updated 3 weeks ago
- Generative Models for Graph-Based Protein Design☆284Dec 24, 2020Updated 5 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,291May 22, 2025Updated 9 months ago
- Deep networks for protein functional inference☆186Feb 20, 2026Updated last week
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Feb 4, 2026Updated last month
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆732Jun 19, 2024Updated last year
- ☆192Feb 8, 2022Updated 4 years ago
- ☆209Apr 21, 2025Updated 10 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆3,986Feb 7, 2024Updated 2 years ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆318Nov 15, 2025Updated 3 months ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆315Jun 13, 2025Updated 8 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,169Feb 21, 2026Updated last week
- Neural Networks for Protein Sequence Alignment☆135Nov 11, 2024Updated last year
- ☆76Sep 25, 2024Updated last year
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆732Dec 11, 2022Updated 3 years ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆305Apr 6, 2025Updated 10 months ago
- open source repository☆146Nov 30, 2023Updated 2 years ago
- ☆571Apr 3, 2025Updated 11 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆42Jan 27, 2026Updated last month
- ☆255Jul 31, 2024Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 9 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆62May 21, 2025Updated 9 months ago
- Official repository for the ProteinGym benchmarks☆391Jan 12, 2026Updated last month
- Code for the ProteinMPNN paper☆1,636Aug 14, 2024Updated last year
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆297Oct 23, 2025Updated 4 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆375Jun 3, 2024Updated last year
- Official release of the ProGen models☆692Aug 4, 2023Updated 2 years ago
- UniRep model, usage, and examples.☆360Jun 21, 2022Updated 3 years ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆369Updated this week
- ☆547Feb 6, 2025Updated last year
- MMseqs2: ultra fast and sensitive search and clustering suite☆1,984Feb 21, 2026Updated last week
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆175Oct 7, 2025Updated 4 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆253Jan 31, 2026Updated last month
- ☆12Dec 2, 2024Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆567Nov 19, 2025Updated 3 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago