ml4bio / Dense-Homolog-RetrievalLinks
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
☆115Updated 11 months ago
Alternatives and similar repositories for Dense-Homolog-Retrieval
Users that are interested in Dense-Homolog-Retrieval are comparing it to the libraries listed below
Sorting:
- Multi-class signal peptide prediction and structure decoding model.☆89Updated 6 months ago
- Genomic language model predicts protein co-regulation and function☆82Updated 4 months ago
- Neural Networks for Protein Sequence Alignment☆124Updated 8 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 7 months ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆184Updated last week
- Feature map and function annotation of Proteins☆33Updated last year
- snakemake pipeline for creating trees from sequence sets☆84Updated 2 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 4 months ago
- ☆68Updated 10 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆139Updated 8 months ago
- ☆76Updated last year
- Evolutionary velocity with protein language models☆93Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆38Updated last week
- MMseqs2 app to run on your workstation or servers☆90Updated last week
- ☆89Updated last month
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Fast protein structure searching or your money back☆109Updated 3 months ago
- a pipeline to build similarity maps of protein space☆36Updated 7 months ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆31Updated this week
- ☆90Updated 9 months ago
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- ColabFold protocol☆52Updated 9 months ago
- ☆65Updated 9 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated 10 months ago
- Official release of the ProGen models☆34Updated 6 months ago
- Install alphafold on the local machine, get out of docker.☆102Updated 3 years ago
- Protein 3D structure prediction pipeline☆84Updated last week
- Code repository of "Deep generative design of RNA family sequences"☆35Updated last year
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆65Updated 5 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago