ml4bio / Dense-Homolog-Retrieval
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
☆100Updated 6 months ago
Alternatives and similar repositories for Dense-Homolog-Retrieval:
Users that are interested in Dense-Homolog-Retrieval are comparing it to the libraries listed below
- Multiple Protein Structure Alignment at Scale with FoldMason☆157Updated 2 weeks ago
- ☆65Updated 5 months ago
- Feature map and function annotation of Proteins☆32Updated 8 months ago
- Multi-class signal peptide prediction and structure decoding model.☆83Updated 3 weeks ago
- snakemake pipeline for creating trees from sequence sets☆74Updated last month
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 11 months ago
- MMseqs2 app to run on your workstation or servers☆71Updated last week
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆120Updated last month
- Transmembrane proteins predicted through Language Model embeddings☆33Updated last month
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆117Updated 3 months ago
- ☆72Updated last year
- ColabFold protocol☆48Updated 4 months ago
- Fast protein structure searching or your money back☆95Updated 2 weeks ago
- Evolutionary velocity with protein language models☆86Updated last year
- Protein language model trained on coding DNA☆46Updated 4 months ago
- Genomic language model predicts protein co-regulation and function☆72Updated last year
- Protein 3D structure prediction pipeline☆70Updated this week
- Geometric deep learning of protein–DNA binding specificity☆62Updated 4 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆67Updated 2 months ago
- ☆25Updated 9 months ago
- Detection of remote homology by comparison of protein language model representations☆47Updated 2 months ago
- A domain parser for Alphafold models☆34Updated last year
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆51Updated 10 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆41Updated last month
- ☆28Updated 3 years ago
- ☆32Updated 5 months ago
- ☆49Updated 8 months ago
- a pipeline to build similarity maps of protein space☆31Updated 2 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆52Updated 3 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 2 months ago