Alternatives and similar repositories for DeepSequence

Users that are interested in DeepSequence are comparing it to the libraries listed below

• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆274Updated 5 months ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆177Updated last year
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆144Updated 2 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆211Updated last year
• MachineLearningLifeScience / meaningful-protein-representations
  ☆111Updated 3 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆111Updated 2 years ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆262Updated 7 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 4 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆329Updated 2 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆109Updated last year
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆110Updated last year
• microsoft / protein-sequence-models
  ☆250Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆128Updated 3 years ago
• aqlaboratory / rgn2
  ☆107Updated last year
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆73Updated 4 years ago
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• Biomatter-Designs / ProteinGAN
  ☆192Updated 3 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆182Updated 4 years ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆356Updated 3 years ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆60Updated 2 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆144Updated last year
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆100Updated 2 weeks ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆228Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆80Updated last year
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆87Updated 2 years ago
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆176Updated last month