Alternatives and similar repositories for DeepSequence:

Users that are interested in DeepSequence are comparing it to the libraries listed below

• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆258Updated 3 weeks ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆167Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆123Updated 3 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆192Updated last year
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆225Updated 2 months ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆107Updated 8 months ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• MachineLearningLifeScience / meaningful-protein-representations
  ☆108Updated 3 years ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆170Updated 7 months ago
• gjoni / trDesign
  trRosetta for protein design
  ☆177Updated 3 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆99Updated 3 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆89Updated last year
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆137Updated last year
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆84Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆147Updated last year
• aqlaboratory / rgn2
  ☆104Updated last year
• microsoft / protein-sequence-models
  ☆240Updated 7 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆63Updated 7 years ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆159Updated 2 years ago
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago
• alex-hh / deep-protein-generation
  ☆56Updated 2 years ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆96Updated 6 months ago
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆205Updated 10 months ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆314Updated 2 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆110Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆97Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆72Updated 11 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆128Updated last month