debbiemarkslab / DeepSequence
A generative latent variable model for biological sequence families.
☆209Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for DeepSequence
- Evolutionary couplings from protein and RNA sequence alignments☆241Updated last week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆157Updated 8 months ago
- Efficient evolution from protein language models☆175Updated last year
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆122Updated 3 years ago
- ☆104Updated 2 years ago
- Bilingual Language Model for Protein Sequence and Structure☆184Updated last month
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆106Updated last year
- Multi-task and masked language model-based protein sequence embedding models.☆96Updated 3 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆104Updated last year
- Unconstrained lattice antibody-antigen bindings generator☆101Updated 4 months ago
- ☆101Updated 11 months ago
- AbLang: A language model for antibodies☆128Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆118Updated 4 years ago
- Deep functional residue identification☆304Updated last year
- Compressing protein structures effectively with torsion angles☆161Updated 3 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆137Updated 10 months ago
- trRosetta for protein design☆172Updated 3 years ago
- Evolutionary velocity with protein language models☆83Updated last year
- ☆56Updated 3 years ago
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆152Updated 2 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆109Updated last week
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- ☆127Updated 3 years ago
- ☆82Updated 4 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 3 years ago
- Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.☆147Updated last year
- Install alphafold on the local machine, get out of docker.☆100Updated 3 years ago
- Public repository describing training and testing of AntiBERTa.☆54Updated last year
- Protein design and variant prediction using autoregressive generative models☆93Updated 9 months ago