A generative latent variable model for biological sequence families.
☆256Mar 15, 2022Updated 4 years ago
Alternatives and similar repositories for DeepSequence
Users that are interested in DeepSequence are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mutation effects predicted from sequence co-variation☆75Sep 3, 2017Updated 8 years ago
- Evolutionary couplings from protein and RNA sequence alignments☆315Apr 20, 2026Updated 4 months ago
- UniRep model, usage, and examples.☆367Mar 1, 2026Updated 5 months ago
- Inference of couplings in proteins and RNAs from sequence variation☆128Jan 21, 2023Updated 3 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆71Jun 1, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Protein design and variant prediction using autoregressive generative models☆124Jan 23, 2024Updated 2 years ago
- ☆82Oct 27, 2021Updated 4 years ago
- Evolutionary velocity with protein language models☆98Dec 9, 2025Updated 8 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆95Jul 13, 2023Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆69Sep 13, 2022Updated 3 years ago
- Protein function prediction using a variational autoencoder☆95Mar 7, 2018Updated 8 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆744Dec 11, 2022Updated 3 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 3 years ago
- Generative Models for Graph-Based Protein Design☆291Dec 24, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,169Feb 7, 2024Updated 2 years ago
- Variational Bayes for discrete undirected models☆11Aug 7, 2017Updated 9 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- Analysis and figure code from Alley et al. 2019.☆60Mar 25, 2023Updated 3 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆135Nov 19, 2025Updated 9 months ago
- ☆13Jul 14, 2023Updated 3 years ago
- Listing of papers about machine learning for proteins.☆1,715May 31, 2024Updated 2 years ago
- Reimplementation of the UniRep protein featurization model.☆107Sep 3, 2024Updated last year
- trRosetta for protein design☆183May 15, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆207Mar 16, 2024Updated 2 years ago
- ☆20Mar 31, 2021Updated 5 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆140Apr 23, 2026Updated 4 months ago
- ☆260Jul 31, 2024Updated 2 years ago
- Visually explore covariation in protein families☆41Dec 8, 2019Updated 6 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated 2 years ago
- Efficient evolution from protein language models☆227Aug 26, 2023Updated 3 years ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆16Jun 7, 2023Updated 3 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,323May 22, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Official release of the ProGen models☆705Jun 2, 2026Updated 2 months ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- ☆189Feb 8, 2022Updated 4 years ago
- Deep functional residue identification☆354Mar 24, 2023Updated 3 years ago
- Remote protein homology detection suite.☆629Aug 12, 2025Updated last year
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆10Jun 11, 2022Updated 4 years ago
- Official repository for the ProteinGym benchmarks☆467Mar 25, 2026Updated 5 months ago