debbiemarkslab / DeepSequenceLinks
A generative latent variable model for biological sequence families.
☆241Updated 3 years ago
Alternatives and similar repositories for DeepSequence
Users that are interested in DeepSequence are comparing it to the libraries listed below
Sorting:
- Evolutionary couplings from protein and RNA sequence alignments☆282Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- Efficient evolution from protein language models☆215Updated 2 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆103Updated 4 years ago
- Inference of couplings in proteins and RNAs from sequence variation☆113Updated 2 years ago
- Unconstrained lattice antibody-antigen bindings generator☆111Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆270Updated 9 months ago
- Evolutionary velocity with protein language models☆94Updated last year
- ☆127Updated 4 years ago
- Deep functional residue identification☆333Updated 2 years ago
- ☆253Updated last year
- Language modeling of viral evolution☆149Updated 2 years ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆129Updated 3 years ago
- trRosetta for protein design☆182Updated 4 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆110Updated last year
- ☆59Updated 2 years ago
- ☆110Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- ☆107Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆144Updated 3 months ago
- Neural Networks for Protein Sequence Alignment☆128Updated 10 months ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆119Updated 5 years ago
- ☆190Updated 3 years ago
- Antibody Numbering and Antigen Receptor ClassIfication☆237Updated last year
- AbLang: A language model for antibodies☆148Updated 2 years ago
- Compressing protein structures effectively with torsion angles☆179Updated 2 months ago
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆69Updated 8 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆159Updated 5 months ago
- UniRep model, usage, and examples.☆355Updated 3 years ago