Alternatives and similar repositories for DeepSequence

Users that are interested in DeepSequence are comparing it to the libraries listed below

• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆275Updated 5 months ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆329Updated 2 years ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆178Updated last year
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆212Updated 2 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 4 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆112Updated 2 years ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆144Updated 2 years ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆266Updated 7 months ago
• microsoft / protein-sequence-models
  ☆252Updated last year
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆110Updated last year
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆73Updated 4 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆182Updated 4 years ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago
• aqlaboratory / rgn2
  ☆107Updated last year
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 4 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆110Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆81Updated last year
• Biomatter-Designs / ProteinGAN
  ☆192Updated 3 years ago
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆102Updated 2 weeks ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆125Updated 9 months ago
• johli / genesis
  Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences
  ☆30Updated 3 years ago
• churchlab / Deep_diversification_AAV
  Bioinformatics code for paper associated with deep diversification of AAV
  ☆40Updated 9 months ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆146Updated last year
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆68Updated 7 years ago
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆355Updated 3 years ago
• samsinai / FLEXS
  Fitness landscape exploration sandbox for biological sequence design.
  ☆165Updated 2 years ago