Alternatives and similar repositories for DeepSequence

Users that are interested in DeepSequence are comparing it to the libraries listed below

• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆276Updated 2 weeks ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆215Updated 2 years ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆268Updated 8 months ago
• fhalab / embeddings_reproduction
  ☆127Updated 4 years ago
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆113Updated 2 years ago
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆331Updated 2 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 4 years ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆181Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆129Updated 3 years ago
• microsoft / protein-sequence-models
  ☆251Updated last year
• MachineLearningLifeScience / meaningful-protein-representations
  ☆110Updated 3 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆182Updated 4 years ago
• mxfold / mxfold2
  MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration
  ☆142Updated 2 months ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆110Updated last year
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆119Updated 5 years ago
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆146Updated 2 years ago
• Biomatter-Designs / ProteinGAN
  ☆190Updated 3 years ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆125Updated 10 months ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆110Updated last year
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆177Updated 3 months ago
• aqlaboratory / rgn2
  ☆107Updated last year
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆74Updated 4 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆69Updated 8 years ago
• churchlab / UniRep-analysis
  Analysis and figure code from Alley et al. 2019.
  ☆58Updated 2 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆147Updated last year
• alex-hh / deep-protein-generation
  ☆59Updated 2 years ago
• samsledje / D-SCRIPT
  A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
  ☆104Updated last week
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆82Updated last year
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆164Updated 2 years ago