Alternatives and similar repositories for DeepSequence

Users that are interested in DeepSequence are comparing it to the libraries listed below

• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆267Updated 3 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆203Updated last year
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆125Updated 3 years ago
• gjoni / trDesign
  trRosetta for protein design
  ☆179Updated 4 years ago
• microsoft / protein-sequence-models
  ☆247Updated 10 months ago
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆247Updated 5 months ago
• csi-greifflab / Absolut
  Unconstrained lattice antibody-antigen bindings generator
  ☆109Updated 11 months ago
• MachineLearningLifeScience / meaningful-protein-representations
  ☆109Updated 3 years ago
• tbepler / prose
  Multi-task and masked language model-based protein sequence embedding models.
  ☆102Updated 3 years ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆174Updated last year
• alex-hh / deep-protein-generation
  ☆58Updated 2 years ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆140Updated last year
• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆108Updated 2 years ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆103Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆151Updated last year
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆107Updated last year
• brianhie / viral-mutation
  Language modeling of viral evolution
  ☆143Updated 2 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆65Updated 7 years ago
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆173Updated last month
• flatironinstitute / DeepFRI
  Deep functional residue identification
  ☆322Updated 2 years ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆107Updated 9 months ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆112Updated last year
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆214Updated last year
• Rostlab / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆120Updated 4 years ago
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆115Updated 3 years ago
• aqlaboratory / rgn2
  ☆106Updated last year
• churchlab / UniRep
  UniRep model, usage, and examples.
  ☆351Updated 2 years ago
• mheinzinger / SeqVec
  Modelling the Language of Life - Deep Learning Protein Sequences
  ☆72Updated 4 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆87Updated last year