Alternatives and similar repositories for protein-vec:

Users that are interested in protein-vec are comparing it to the libraries listed below

• tymor22 / tm-vec
  ☆66Updated 5 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 2 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆35Updated 5 months ago
• SNU-CSSB / RF2-Lite
  ☆25Updated 9 months ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆14Updated 2 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated last week
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆49Updated 3 months ago
• TattaBio / gLM2
  ☆61Updated 5 months ago
• JudeWells / chainsaw
  ☆32Updated 5 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆24Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆57Updated 3 years ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆28Updated 7 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆53Updated last month
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆23Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆24Updated last year
• jsunn-y / DeCOIL
  A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library
  ☆14Updated last month
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 3 months ago
• clairemcwhite / vcmsa
  ☆29Updated last year
• lehner-lab / domainome
  ☆13Updated 3 months ago
• pfnet-research / GenerRNA
  ☆19Updated 5 months ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆26Updated 7 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆34Updated last year
• swanss / FragFold
  ☆32Updated last month
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆35Updated 7 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• UCLOrengoGroup / cath-alphaflow
  ☆19Updated 3 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆42Updated 4 months ago