Repository for Protein-Vec, a protein embedding mixture of experts model
☆38Jan 24, 2024Updated 2 years ago
Alternatives and similar repositories for protein-vec
Users that are interested in protein-vec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆76Sep 25, 2024Updated 2 years ago
- ☆26May 19, 2024Updated 2 years ago
- Neural Networks for Protein Sequence Alignment☆141Nov 11, 2024Updated last year
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆29Nov 20, 2025Updated 11 months ago
- ☆18Aug 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆19May 15, 2026Updated 5 months ago
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆19Jun 11, 2025Updated last year
- ☆33Dec 12, 2024Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆326Mar 6, 2026Updated 7 months ago
- A lightweight library for loading and manipulating biomolecular structures☆24Aug 8, 2026Updated 2 months ago
- ☆25Jul 6, 2026Updated 3 months ago
- Detection of remote homology by comparison of protein language model representations☆66Oct 22, 2026Updated last week
- ☆10Apr 12, 2023Updated 3 years ago
- Shrinking Proteins with Diffusion☆34Oct 12, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Contrastive learning harmonizing protein language models and natural language models☆44Jun 12, 2024Updated 2 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- "Rewriting protein alphabets with language models"☆27Oct 24, 2026Updated last week
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆42Jun 8, 2023Updated 3 years ago
- Structure-based antibody renumbering☆17Updated this week
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆18Dec 21, 2025Updated 10 months ago
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 5 months ago
- A computational method to optimize degenerate codons for synthesizing an informed combinatorial mutagenesis protein variant library☆17Feb 18, 2025Updated last year
- Scripts to generate and analyze afdb clusters☆12Sep 15, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Towards a protein binder candidate for every protein☆43Sep 1, 2026Updated 2 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆55Dec 3, 2024Updated last year
- ☆121Dec 7, 2022Updated 3 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆65Sep 14, 2026Updated last month
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Sep 29, 2026Updated last month
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 3 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆73Feb 21, 2026Updated 8 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 7 months ago
- ☆192Jul 24, 2026Updated 3 months ago
- Pretrained METL models with minimal dependencies☆18Sep 16, 2026Updated last month
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Oct 7, 2026Updated 3 weeks ago
- ☆40Sep 17, 2024Updated 2 years ago
- Protein binding site prediction with transformers☆18Jul 7, 2026Updated 3 months ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago