Alternatives and similar repositories for protein-vec

Users that are interested in protein-vec are comparing it to the libraries listed below

• Doudna-lab / GARNET_DL
  ☆36Updated 10 months ago
• tymor22 / tm-vec
  ☆74Updated last year
• JudeWells / chainsaw
  ☆44Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 2 months ago
• TattaBio / gLM2
  ☆73Updated last year
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 2 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆56Updated 11 months ago
• SNU-CSSB / RF2-Lite
  ☆31Updated last year
• BrooksResearchGroup-UM / PEVAE_Paper
  Deciphering protein evolution and fitness landscapes with latent space models
  ☆35Updated 4 years ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆16Updated 10 months ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆31Updated 2 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆47Updated 6 months ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆38Updated last week
• KULL-Centre / _2022_functional-sites-cagiada
  ☆23Updated 2 years ago
• UCLOrengoGroup / cath-alphaflow
  ☆23Updated last week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• steineggerlab / mmseqs2-gpu-analysis
  ☆18Updated 6 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated last month
• ronboger / conformal-protein-retrieval
  ☆16Updated 2 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 2 months ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆41Updated 2 years ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆46Updated 3 weeks ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated last year
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆33Updated last year
• liudan111 / PLM-interact
  PLM-interact: extending protein language models to predict protein-protein interactions.
  ☆47Updated 2 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆42Updated last year
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆51Updated 3 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆42Updated 5 months ago