The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics
☆203Sep 18, 2024Updated last year
Alternatives and similar repositories for ProteinInvBench
Users that are interested in ProteinInvBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 3 years ago
- The official implementation of the ICLR'24 paper RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-base…☆50Aug 22, 2024Updated last year
- The official implementation of the ICML'24 paper RFold: Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching P…☆88Jul 20, 2024Updated 2 years ago
- ☆218Sep 24, 2024Updated last year
- Official implementation of the paper "DiffSDS: A Language Diffusion Model for Protein Backbone Inpainting under Geometric Conditions and …☆14Jun 25, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The official implementation of the ICASSP'2023 paper Global-context aware generative protein design.☆26Feb 21, 2023Updated 3 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆276Apr 27, 2025Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆135Nov 19, 2025Updated 8 months ago
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 4 months ago
- The official implementation of the paper "MotifRetro: Exploring the Combinability-Consistency Trade-offs in retrosynthesis via Dynamic Mo…☆11Jun 25, 2023Updated 3 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆88Apr 21, 2026Updated 3 months ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆326Jul 19, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Feb 22, 2023Updated 3 years ago
- ☆144Jun 3, 2025Updated last year
- The official implementation of the ICML'24 paper "A Graph is Worth K Words: Euclideanizing Graph using Pure Transformer".☆49Mar 19, 2025Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆617Mar 8, 2026Updated 5 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆110Jan 11, 2025Updated last year
- ☆24Nov 6, 2024Updated last year
- Generative Models for Graph-Based Protein Design☆291Dec 24, 2020Updated 5 years ago
- Official repository for the ProteinGym benchmarks☆458Mar 25, 2026Updated 4 months ago
- Generative Language Modeling for Antibody Design☆192Jul 20, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆74May 20, 2026Updated 2 months ago
- ☆259Jul 31, 2024Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 11 months ago
- ☆211Apr 21, 2025Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆280Feb 14, 2024Updated 2 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆133Feb 26, 2025Updated last year
- The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.☆12Dec 28, 2023Updated 2 years ago
- List of papers about Proteins Design using Deep Learning☆1,956Aug 2, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Family of Diffusion Protein Language Models (DPLM)☆342Jul 25, 2025Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆72Updated this week
- Bilingual Language Model for Protein Sequence and Structure☆318Mar 6, 2026Updated 5 months ago
- Code for the ProteinMPNN paper☆1,822Aug 14, 2024Updated last year
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆49Oct 28, 2023Updated 2 years ago
- The official implementation of the CVPR'2022 paper Hyperspherical Consistency Regularization.☆29Jun 22, 2022Updated 4 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago