Alternatives and similar repositories for tm-vec

Users that are interested in tm-vec are comparing it to the libraries listed below

• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 8 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• Doudna-lab / GARNET_DL
  ☆37Updated 5 months ago
• JudeWells / chainsaw
  ☆40Updated 9 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 6 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated 6 months ago
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆45Updated 2 weeks ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆35Updated 11 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆56Updated 4 months ago
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆74Updated 3 months ago
• bio-ontology-research-group / deepgo2
  ☆44Updated 9 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated last month
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆41Updated last month
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆42Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated last month
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆51Updated 8 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆38Updated 8 months ago
• piercelab / tcrmodel2
  ☆41Updated 2 months ago
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆15Updated 5 months ago
• CSUBioGroup / DPFunc
  ☆43Updated last week
• AbSciBio / igdesign
  ☆41Updated 5 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆38Updated 9 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆112Updated 9 months ago
• enijkamp / progen2
  Official release of the ProGen models
  ☆32Updated 4 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆75Updated last year