tymor22 / tm-vecLinks
☆68Updated 9 months ago
Alternatives and similar repositories for tm-vec
Users that are interested in tm-vec are comparing it to the libraries listed below
Sorting:
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- Protein language model trained on coding DNA☆47Updated 8 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Updated 3 months ago
- ☆35Updated 6 months ago
- Detection of remote homology by comparison of protein language model representations☆54Updated 7 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 7 months ago
- A domain parser for Alphafold models☆38Updated last year
- Neural Networks for Protein Sequence Alignment☆123Updated 8 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- ☆41Updated 9 months ago
- ☆70Updated 9 months ago
- ☆30Updated last year
- ☆44Updated 10 months ago
- Code repository of "Deep generative design of RNA family sequences"☆35Updated 11 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆100Updated last week
- Evolutionary velocity with protein language models☆93Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆39Updated last week
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆58Updated 4 months ago
- Efficient implementatin of ESM family.☆58Updated 5 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Biological prediction models made simple.☆44Updated this week
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆15Updated 6 months ago
- ☆50Updated 3 months ago
- ColabFold protocol☆52Updated 8 months ago
- GTalign, high-performance protein structure alignment, superposition and search☆46Updated 2 weeks ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆78Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆113Updated 10 months ago
- Learning the language of protein-protein interactions☆79Updated last month
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆151Updated 2 months ago
- ☆73Updated 10 months ago