☆75Sep 25, 2024Updated last year
Alternatives and similar repositories for tm-vec
Users that are interested in tm-vec are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Neural Networks for Protein Sequence Alignment☆136Nov 11, 2024Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆61Dec 16, 2024Updated last year
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Fast protein structure searching or your money back☆118Mar 17, 2026Updated 3 weeks ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆122Aug 30, 2024Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Sep 9, 2025Updated 7 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Sep 9, 2025Updated 7 months ago
- ☆16Dec 10, 2024Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated 10 months ago
- Deep functional residue identification☆349Mar 24, 2023Updated 3 years ago
- Ultra-fast in-silico structure mutation☆36Apr 9, 2025Updated last year
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,210Mar 10, 2026Updated last month
- Transformer-based protein function Annotation with joint feature-Label Embedding☆37Dec 18, 2024Updated last year
- ☆137Jun 3, 2025Updated 10 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆96Apr 24, 2024Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆268Apr 27, 2025Updated 11 months ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- ☆29Apr 2, 2026Updated last week
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- sensitive and precise assembly of short sequencing reads☆164Oct 11, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆56Sep 11, 2024Updated last year
- ☆18Feb 25, 2026Updated last month
- Scoring methods for predicting the DDG upon protein mutation☆16Feb 20, 2023Updated 3 years ago
- Open-source docking pipeline leveraging pairwise statistics☆15Jul 26, 2024Updated last year
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model☆203Feb 14, 2026Updated last month
- ☆10Mar 29, 2025Updated last year
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated last year
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- Public Release of ProGen3 family of Models☆105Jul 21, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11May 28, 2021Updated 4 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆92Dec 29, 2023Updated 2 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆266Jan 31, 2026Updated 2 months ago
- ☆74Feb 13, 2026Updated last month
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆581Mar 8, 2026Updated last month
- Prediction and re-engineering of the cofactor specificity of Rossmann-fold proteins☆13Nov 5, 2023Updated 2 years ago