glencoesoftware / NGFF-ConverterLinks
NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
☆35Updated last month
Alternatives and similar repositories for NGFF-Converter
Users that are interested in NGFF-Converter are comparing it to the libraries listed below
Sorting:
- native Python dataclasses for the OME data model☆65Updated last week
- Raw format to OME-TIFF converter☆56Updated last month
- Command-line client for Fractal☆47Updated this week
- A napari plugin for zarr backed OME-NGFF images☆42Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated this week
- Bio-Formats image file format to raw format converter☆102Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 9 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated last week
- ☆18Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 3 weeks ago
- ☆41Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last month
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆148Updated last week
- GIve easy, high-level access to ome-zarr fileset☆22Updated 3 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- Pydantic models for OME-NGFF☆24Updated 3 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 4 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆110Updated this week
- Interface to the Bioformats Java library☆13Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 7 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆99Updated this week
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 5 months ago
- Python project containing Ice remoting code for OMERO☆27Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆34Updated this week
- Experimental micro-service for implementing the Zarr spec over HTTP☆20Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- GPU-accelerated Image Processing library for Python☆52Updated last week