krentzd / napari-clemregLinks
An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
☆20Updated 3 months ago
Alternatives and similar repositories for napari-clemreg
Users that are interested in napari-clemreg are comparing it to the libraries listed below
Sorting:
- Browse your OMERO database from within napari.☆40Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- dask empowered fast4dreg☆15Updated last year
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 4 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Updated 6 months ago
- Python libraries for loading, running and packaging bioimage.io models☆35Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated this week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- ☆36Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- ☆22Updated 7 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Updated last month
- A napari plugin for zarr backed OME-NGFF images☆43Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 months ago
- python tools for BigDataViewer☆22Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- A template repo used to make new napari plugins☆31Updated this week
- ☆15Updated last week
- ☆41Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- ☆12Updated 4 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 3 months ago
- Command-line client for Fractal☆49Updated this week