krentzd / napari-clemregLinks
An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
☆19Updated last week
Alternatives and similar repositories for napari-clemreg
Users that are interested in napari-clemreg are comparing it to the libraries listed below
Sorting:
- ☆36Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- Multiple file format reading directly into napari using pure Python☆38Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated last month
- dask empowered fast4dreg☆15Updated 11 months ago
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- A napari plugin for zarr backed OME-NGFF images☆38Updated 2 weeks ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆25Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 6 months ago
- python tools for BigDataViewer☆22Updated 10 months ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆24Updated 6 months ago
- A template repo used to make new napari plugins☆27Updated this week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 6 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆88Updated 2 weeks ago
- ☆15Updated last week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 3 weeks ago
- ☆23Updated 4 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆22Updated 11 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- Visualizing feature measurements on label images in napari☆10Updated last year
- A 3D interactivity toolbox for napari☆37Updated 3 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week