An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
☆23Aug 27, 2026Updated last month
Alternatives and similar repositories for napari-clemreg
Users that are interested in napari-clemreg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 5 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 10 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- Interprocess environment manager 🧊☆18Oct 9, 2026Updated last week
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆38Oct 8, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14May 17, 2024Updated 2 years ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated last year
- Template for creating a new python repository☆13Sep 22, 2026Updated 3 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31Updated this week
- The RPC library used in ImJoy.☆25Jul 23, 2024Updated 2 years ago
- Denoising via adaptive binning.☆14Aug 28, 2026Updated last month
- Guides and code for 3D nuclear instance segmentation☆24Dec 2, 2025Updated 10 months ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A template repo used to make new napari plugins☆43Updated this week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆93Aug 24, 2026Updated last month
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated 2 years ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated 2 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆40Oct 1, 2026Updated 2 weeks ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Browse, share, and publish OME-Zarr data☆30Updated this week
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 3 years ago
- A napari plugin to view and edit layer metadata☆14Oct 6, 2026Updated last week
- ☆15Apr 1, 2026Updated 6 months ago
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆31Oct 7, 2026Updated last week
- Rust implementation of the N5 "Not HDF5" tensor file system format☆17Dec 6, 2022Updated 3 years ago
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆55Jul 3, 2026Updated 3 months ago
- A 3D interactivity toolbox for napari☆38Jul 8, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- RRID:SCR_027562☆10Updated this week
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆25Oct 5, 2026Updated last week