krentzd / napari-clemreg
An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
☆16Updated last week
Alternatives and similar repositories for napari-clemreg:
Users that are interested in napari-clemreg are comparing it to the libraries listed below
- Optimize image processing workflows in napari☆17Updated this week
- dask empowered fast4dreg☆11Updated 5 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 3 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated last week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated this week
- ☆23Updated 2 weeks ago
- A 3D interactivity toolbox for napari☆34Updated 2 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 weeks ago
- A template repo used to make new napari plugins☆20Updated last week
- Multiple file format reading directly into napari using pure Python☆35Updated 9 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆12Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆25Updated 3 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 7 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- ☆17Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated last month
- Running compute-intense parts of BigStitcher distributed☆26Updated 3 weeks ago
- Command-line client for Fractal☆45Updated last week
- ☆15Updated 2 years ago
- MethodsJ2☆14Updated 2 years ago
- ☆29Updated last year