NL-BioImaging / biomeroLinks
BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
☆24Updated last week
Alternatives and similar repositories for biomero
Users that are interested in biomero are comparing it to the libraries listed below
Sorting:
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 9 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆42Updated last week
- ☆18Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 3 weeks ago
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated this week
- Command-line client for Fractal☆47Updated this week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- native Python dataclasses for the OME data model☆65Updated last week
- MethodsJ2☆14Updated 3 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 3 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 5 months ago
- ☆14Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- A 3D interactivity toolbox for napari☆37Updated 5 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated this week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Updated 3 weeks ago
- Create web-based OME-Zarr galleries☆22Updated last month
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- An introduction to OME-Zarr for big bioimaging data☆22Updated last week
- A template repo used to make new napari plugins☆30Updated 3 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 2 months ago
- Python project containing Ice remoting code for OMERO☆27Updated last month
- ☆36Updated last year