BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
☆28Sep 1, 2026Updated this week
Alternatives and similar repositories for biomero
Users that are interested in biomero are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Updated this week
- Experimental micro-service for implementing the Zarr spec over HTTP☆21May 25, 2026Updated 3 months ago
- Browse your OMERO database from within napari.☆40Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 3 months ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Aug 27, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Illustrations created by Henning Falk for the Zarr community☆49Jan 29, 2025Updated last year
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Jun 5, 2026Updated 2 months ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 11 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 8 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration …☆18Jun 20, 2023Updated 3 years ago
- native Python dataclasses for the OME data model☆68Apr 2, 2026Updated 5 months ago
- ☆19Aug 27, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ilastik plugin for napari☆15Mar 2, 2026Updated 6 months ago
- A napari plugin for zarr backed OME-NGFF images☆54Updated this week
- An introduction to OME-Zarr for big bioimaging data☆28Updated this week
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated last year
- ☆33May 2, 2025Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆129Aug 23, 2026Updated last week
- ☆45Aug 26, 2026Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reading HDF5 files with Zarr☆12Oct 5, 2021Updated 4 years ago
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated last month
- ☆41Jul 24, 2024Updated 2 years ago
- https://grasp.ufv.br/☆17Jul 6, 2023Updated 3 years ago
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 2 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆38Updated this week
- A toolkit to quantify cell dynamics in living tissues☆13Dec 18, 2018Updated 7 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Collection of useful (to me) python scripts for interacting with napari☆13Aug 14, 2022Updated 4 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆72Updated this week
- A minimal Zarr image viewer based on Viv.☆199Jun 22, 2026Updated 2 months ago
- ☆13Aug 16, 2024Updated 2 years ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆132Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week
- OME model (specification, code generator, implementation)☆17Aug 7, 2026Updated 3 weeks ago