Alternatives and similar repositories for biomero

Users that are interested in biomero are comparing it to the libraries listed below

• ome / omero-cli-zarr
  ☆17Updated last week
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆16Updated 2 weeks ago
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆22Updated 2 months ago
• fmi-faim / faim-ipa
  A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
  ☆14Updated last week
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading OME-Zarr (meta)data
  ☆29Updated this week
• fractal-analytics-platform / ngio
  NGIO is a Python library to streamline OME-Zarr image analysis workflows.
  ☆14Updated last week
• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 3 years ago
• guiwitz / napari-skimage
  A minimal dependency napari plugin giving access to scikit-image functions
  ☆18Updated last month
• BioImageTools / ome-zarr-image-analysis-nextflow
  Basic example of using OME-Zarr in a Nextflow pipeline
  ☆16Updated 6 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week
• guiwitz / napari-serialcellpose
  ☆15Updated 2 years ago
• ome / omero-cli-transfer
  An OMERO CLI plugin for creating transfer packets between OMERO servers.
  ☆17Updated 3 weeks ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆37Updated this week
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated 8 months ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆34Updated last month
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆33Updated this week
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 3 years ago
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆20Updated 6 months ago
• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆14Updated last month
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆46Updated last week
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 10 months ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 3 weeks ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆56Updated last month
• haesleinhuepf / devbio-napari
  ☆49Updated last month
• BIOP / BIOP-desktop
  ☆12Updated 3 weeks ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆36Updated 10 months ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆31Updated last week
• NFDI4BIOIMAGE / training
  ☆14Updated this week
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆40Updated last week
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆28Updated last week