NL-BioImaging / biomeroLinks
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
☆17Updated 4 months ago
Alternatives and similar repositories for biomero
Users that are interested in biomero are comparing it to the libraries listed below
Sorting:
- GIve easy, high-level access to ome-zarr fileset☆17Updated last week
- ☆17Updated 2 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆23Updated 4 months ago
- A napari plugin for zarr backed OME-NGFF images☆33Updated 2 weeks ago
- Browse your OMERO database from within napari.☆38Updated this week
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated this week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆17Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Command-line client for Fractal☆46Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 3 weeks ago
- native Python dataclasses for the OME data model☆58Updated 3 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆33Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆46Updated last week
- ☆15Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 3 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- A 3D interactivity toolbox for napari☆37Updated 3 weeks ago
- ☆51Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 10 months ago
- Pydantic models for OME-NGFF☆24Updated last week
- A template repo used to make new napari plugins☆26Updated last week
- Create web-based OME-Zarr galleries☆19Updated 3 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆44Updated 5 months ago
- MethodsJ2☆14Updated 3 years ago
- python tools for BigDataViewer☆22Updated 7 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 8 months ago