Alternatives and similar repositories for biomero:

Users that are interested in biomero are comparing it to the libraries listed below

• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆13Updated 3 weeks ago
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆20Updated 2 weeks ago
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated 4 months ago
• BioImageTools / ome-zarr-image-analysis-nextflow
  Basic example of using OME-Zarr in a Nextflow pipeline
  ☆15Updated 2 months ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆32Updated 3 weeks ago
• ome / omero-cli-zarr
  ☆16Updated 3 weeks ago
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading OME-Zarr (meta)data
  ☆16Updated this week
• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆12Updated 2 months ago
• ome / omero-cli-transfer
  An OMERO CLI plugin for creating transfer packets between OMERO servers.
  ☆17Updated last month
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆35Updated 2 weeks ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 6 months ago
• guiwitz / napari-skimage
  A minimal dependency napari plugin giving access to scikit-image functions
  ☆17Updated 4 months ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆16Updated last week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆40Updated 3 months ago
• haesleinhuepf / devbio-napari
  ☆45Updated 3 months ago
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 3 years ago
• guiwitz / napari-serialcellpose
  ☆15Updated 2 years ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆22Updated 4 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆55Updated last week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆32Updated last month
• multiview-stitcher / napari-stitcher
  A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher
  ☆15Updated last month
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆20Updated 2 months ago
• lacan / microscopy-icons
  Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/
  ☆11Updated last year
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated this week
• zoccoler / napari-flim-phasor-plotter
  ☆10Updated 5 months ago
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆13Updated 9 months ago
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆27Updated 2 weeks ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated last year
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆29Updated this week
• NEUBIAS / Defragmentation_TS2_EOSC-Life_2023
  "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…
  ☆10Updated last year