NL-BioImaging / biomero
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
☆14Updated this week
Alternatives and similar repositories for biomero:
Users that are interested in biomero are comparing it to the libraries listed below
- GIve easy, high-level access to ome-zarr fileset☆13Updated 3 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 5 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 5 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated 2 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated last month
- ☆15Updated 2 years ago
- A napari plugin for zarr backed OME-NGFF images☆32Updated last week
- ☆16Updated last week
- A minimal Python package for reading OME-Zarr (meta)data☆21Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- Browse your OMERO database from within napari.☆35Updated this week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated 2 months ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- MethodsJ2☆14Updated 2 years ago
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Command-line client for Fractal☆45Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated last month
- ☆46Updated 4 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- ☆23Updated 5 months ago
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- ☆21Updated last year
- native Python dataclasses for the OME data model☆55Updated this week