allen-cell-animated / timelapse-colorizerLinks
A web-based, time-series visualizer for tracked segmented data.
☆12Updated last week
Alternatives and similar repositories for timelapse-colorizer
Users that are interested in timelapse-colorizer are comparing it to the libraries listed below
Sorting:
- Interface to the Bioformats Java library☆13Updated last month
- Python API and Jupyter widget for Vitessce☆52Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated this week
- rna2seg☆17Updated 3 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆41Updated 2 weeks ago
- A plugin to visualise 3D spatial single cell omics☆22Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆48Updated last week
- ☆12Updated this week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Deep learning based spot detection for FISH images.☆23Updated 2 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆17Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆49Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆52Updated 2 weeks ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Command-line client for Fractal☆46Updated last week
- Interactive visualization of spatial omics data☆64Updated this week
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated 2 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆137Updated 2 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆29Updated last year
- Spatial omics analysis and visualization library☆15Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Pydantic models for OME-NGFF☆24Updated last week
- ☆37Updated 2 weeks ago
- Optimal gating strategies for flow and mass cytometry.☆13Updated 4 months ago
- Raw format to OME-TIFF converter☆55Updated 2 weeks ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- ☆29Updated last year