ome-zarr-models / ome-zarr-bookLinks
An introduction to OME-Zarr for big bioimaging data
☆22Updated this week
Alternatives and similar repositories for ome-zarr-book
Users that are interested in ome-zarr-book are comparing it to the libraries listed below
Sorting:
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- ☆18Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 3 months ago
- Python API and Jupyter widget for Vitessce☆59Updated 3 weeks ago
- A plugin to visualise 3D spatial single cell omics☆20Updated last month
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- Interactive visualization of spatial omics data☆73Updated last week
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated last week
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated 2 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 weeks ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆17Updated last week
- GIve easy, high-level access to ome-zarr fileset☆22Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated this week
- A relabeling tool for tiled segmentation with Dask☆16Updated last year
- ☆80Updated last week
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 3 weeks ago
- Raw format to OME-TIFF converter☆56Updated last week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- rna2seg☆17Updated 6 months ago
- ☆13Updated last month
- Command-line client for Fractal☆47Updated this week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆32Updated this week
- Framework for image and flow cytometry analysis☆32Updated last month
- Interface to the Bioformats Java library☆13Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆102Updated this week
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago