ome / omero-cli-zarrLinks
☆18Updated 2 weeks ago
Alternatives and similar repositories for omero-cli-zarr
Users that are interested in omero-cli-zarr are comparing it to the libraries listed below
Sorting:
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆24Updated this week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆20Updated last week
- A napari plugin for zarr backed OME-NGFF images☆38Updated this week
- GIve easy, high-level access to ome-zarr fileset☆21Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆50Updated last week
- native Python dataclasses for the OME data model☆61Updated 2 weeks ago
- A minimal Python package for reading and validating OME-Zarr (meta)data☆34Updated last week
- Browse your OMERO database from within napari.☆39Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- Create web-based OME-Zarr galleries☆20Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 2 months ago
- Pydantic models for OME-NGFF☆24Updated 3 weeks ago
- ☆14Updated this week
- Python project containing Ice remoting code for OMERO☆27Updated this week
- A 3D interactivity toolbox for napari☆37Updated 3 months ago
- Command-line client for Fractal☆47Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated this week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆30Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆17Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- ☆39Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- Streaming directly to Zarr on the file system or S3☆22Updated this week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆18Updated last week
- ☆32Updated 5 months ago
- ilastik plugin for napari☆14Updated last month
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆21Updated 2 months ago