ome / omero-cli-zarrLinks
☆17Updated last week
Alternatives and similar repositories for omero-cli-zarr
Users that are interested in omero-cli-zarr are comparing it to the libraries listed below
Sorting:
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆17Updated 3 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆45Updated this week
- native Python dataclasses for the OME data model☆57Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆16Updated this week
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆23Updated 4 months ago
- Pydantic models for OME-NGFF☆24Updated last week
- GIve easy, high-level access to ome-zarr fileset☆17Updated last month
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 8 months ago
- Browse your OMERO database from within napari.☆38Updated last week
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆28Updated last year
- Create web-based OME-Zarr galleries☆19Updated 2 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆43Updated 5 months ago
- A 3D interactivity toolbox for napari☆37Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆17Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Command-line client for Fractal☆46Updated last week
- napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)☆9Updated last year
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆34Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆92Updated last week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆17Updated 2 weeks ago
- ☆28Updated 2 months ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- Main tasks for the Fractal analytics platform☆16Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- serve Zarr datasets via HTTP☆28Updated 2 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 9 months ago
- Python project containing Ice remoting code for OMERO☆24Updated last month