ome / omero-cli-zarrLinks
☆18Updated last week
Alternatives and similar repositories for omero-cli-zarr
Users that are interested in omero-cli-zarr are comparing it to the libraries listed below
Sorting:
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆28Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated this week
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- A napari plugin for zarr backed OME-NGFF images☆42Updated last week
- native Python dataclasses for the OME data model☆64Updated 2 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆21Updated 2 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last week
- Create web-based OME-Zarr galleries☆21Updated 2 weeks ago
- Browse your OMERO database from within napari.☆39Updated 2 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆24Updated 3 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆32Updated last month
- Streaming directly to Zarr on the file system or S3☆24Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 4 months ago
- ☆14Updated this week
- Command-line client for Fractal☆47Updated this week
- Pydantic models for OME-NGFF☆24Updated 2 months ago
- Python project containing Ice remoting code for OMERO☆27Updated last month
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Updated 3 weeks ago
- A 3D interactivity toolbox for napari☆37Updated 4 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- A template repo used to make new napari plugins☆28Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆34Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 2 months ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week
- ☆39Updated this week